Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g069080.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02350.1 | Solyc02g069080.2.1 | AT1G10180.1 | 23495664 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0005g00680.t01 | Wine grape | cytosol | 82.59 | 82.79 |
| KRH68203 | Soybean | endoplasmic reticulum | 77.74 | 78.32 |
| KRH14016 | Soybean | mitochondrion | 78.48 | 77.23 |
| Bra018558.1-P | Field mustard | cytosol | 73.63 | 74.37 |
| AT4G02350.1 | Thale cress | cytosol | 72.64 | 74.21 |
| Bra036274.1-P | Field mustard | cytosol | 70.77 | 72.48 |
| CDY50392 | Canola | cytosol | 68.16 | 71.45 |
| CDY65634 | Canola | cytosol | 67.66 | 70.83 |
| GSMUA_Achr3P24060_001 | Banana | cytosol | 63.93 | 66.93 |
| Os01t0351300-01 | Rice | plasma membrane | 60.32 | 60.62 |
| EES02923 | Sorghum | cytosol, mitochondrion | 61.07 | 60.62 |
| Zm00001d040788_P001 | Maize | cytosol, mitochondrion, plastid | 60.95 | 60.49 |
| Zm00001d009226_P001 | Maize | mitochondrion | 60.45 | 60.0 |
| TraesCS3B01G232000.1 | Wheat | cytosol | 59.95 | 59.8 |
| GSMUA_Achr8P06600_001 | Banana | cytosol | 57.96 | 59.67 |
| TraesCS3A01G199000.2 | Wheat | cytosol | 59.7 | 59.55 |
| HORVU0Hr1G006630.1 | Barley | cytosol | 60.2 | 57.14 |
| TraesCS3D01G205600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane, plastid | 59.83 | 55.29 |
| Solyc12g096290.1.1 | Tomato | cytosol | 49.63 | 52.16 |
Protein Annotations
| Gene3D:1.10.357.30 | Gene3D:1.20.58.670 | MapMan:22.6.3.7 | ncoils:Coil | InterPro:EXOC6/Sec15 | GO:GO:0000003 |
| GO:GO:0000145 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005615 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006887 | GO:GO:0006904 |
| GO:GO:0007154 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009653 | GO:GO:0009846 | GO:GO:0009856 |
| GO:GO:0009860 | GO:GO:0009875 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0030154 | GO:GO:0040007 | GO:GO:0060321 | GO:GO:0070062 | UniProt:K4CVA5 | PFAM:PF04091 |
| PIRSF:PIRSF025007 | PANTHER:PTHR12702 | PANTHER:PTHR12702:SF1 | EnsemblPlantsGene:Solyc09g075280.1 | EnsemblPlants:Solyc09g075280.1.1 | UniParc:UPI000276B96F |
| SEG:seg | : | : | : | : | : |
Description
Exocyst complex component [Source:UniProtKB/TrEMBL;Acc:K4CVA5]
Coordinates
chr9:-:67014593..67017007
Molecular Weight (calculated)
91272.9 Da
IEP (calculated)
6.717
GRAVY (calculated)
-0.234
Length
804 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTSKMRRKV VPAVENGDSA DKLDQVLLSA AICNGEDVGP FVRKGFASGK PETVLLHLRH FARSKESEIE DVCRAHYEDF ITAVDDLRSL LSDVDSLKSS
101: LSNSNSQLQS VAVPLLTTLD SFVEARNKCK NITLAIQSLR TCVQLVELCS RANRHLSENN FYMALKCVDS IEREFMNKTP STTLRRMLEK QIPAIRSHIE
201: RRITKEFGDW LVEIRVVSRN LGQLAIGQAS ASRQREEELR IKQRQAEEQS RLSLRDCVYA LEEEDDDGFN GISDDGKDGY SNGSNGMLGF DLTPLYRAYH
301: INQTLGLEDR FKKYYFENRK LQLTSDFQVS SMTPFLESHQ TFFAQIAGFF IVEDRVLRTG GKLVSKMEVE NLWDTAMSKM CSVLEDQFSR MQTANHLLLI
401: KDYVSLLSVT LRRYGYPVEA LLDVLSKHRD KYHELLLSDC RKQITEALAA DKFEQMYMKK EYEYSMNVLS FQLQTSNIMP AFPYVAPFSC TVPDCCRIVR
501: SFIEDSVSFM SHGGQLDFYD VVKKYLDRLL TEVLDGALLK LIHTSIGGVT QAMQMAANMA VFERACDFFF RHAAQLSGIP LRMAERGRRL FPLTKARDAA
601: EEMLSGLLKQ KVDGFLLLIE NVNWMADDPL QSGNEYVHEV IIFLETLTST AQQILPVQVL KRVLQDVLCH ISEMIVGALL GESVKRFNVN AVMALDVDIR
701: MLESFAENQA PLLSEADASQ LKAALGESRQ LVNLLLSNHP ENFLNPVIRE RSYNALDYRK VVTISEKMKD QSDRLFGSFG TRGAKQNTKK KSLDALIKRL
801: KDVN
101: LSNSNSQLQS VAVPLLTTLD SFVEARNKCK NITLAIQSLR TCVQLVELCS RANRHLSENN FYMALKCVDS IEREFMNKTP STTLRRMLEK QIPAIRSHIE
201: RRITKEFGDW LVEIRVVSRN LGQLAIGQAS ASRQREEELR IKQRQAEEQS RLSLRDCVYA LEEEDDDGFN GISDDGKDGY SNGSNGMLGF DLTPLYRAYH
301: INQTLGLEDR FKKYYFENRK LQLTSDFQVS SMTPFLESHQ TFFAQIAGFF IVEDRVLRTG GKLVSKMEVE NLWDTAMSKM CSVLEDQFSR MQTANHLLLI
401: KDYVSLLSVT LRRYGYPVEA LLDVLSKHRD KYHELLLSDC RKQITEALAA DKFEQMYMKK EYEYSMNVLS FQLQTSNIMP AFPYVAPFSC TVPDCCRIVR
501: SFIEDSVSFM SHGGQLDFYD VVKKYLDRLL TEVLDGALLK LIHTSIGGVT QAMQMAANMA VFERACDFFF RHAAQLSGIP LRMAERGRRL FPLTKARDAA
601: EEMLSGLLKQ KVDGFLLLIE NVNWMADDPL QSGNEYVHEV IIFLETLTST AQQILPVQVL KRVLQDVLCH ISEMIVGALL GESVKRFNVN AVMALDVDIR
701: MLESFAENQA PLLSEADASQ LKAALGESRQ LVNLLLSNHP ENFLNPVIRE RSYNALDYRK VVTISEKMKD QSDRLFGSFG TRGAKQNTKK KSLDALIKRL
801: KDVN
001: MQSSKGRRKV GSTTAGAGID SAEKLDELLI SSAICNGEDL GPFVRKTFGT GKPETLLHHL KFFARSKESE IEEVCKAHYQ DFIHAVDDLK SLLSDVESLK
101: SALSDSNSKL QSVAAPLLSS LDSLVEAQTV SKNVDLAIGA VTHCVRVMEL VSRANQHLQS GNFYMALKCV DSIESDFMEK TPSSTLKRML ENRIPAIRSY
201: VERKVNKEFG DWLVEIRVVS RNLGQLAIGE ASAARQREEE LRIKQRQAEE QSRLSLRDCV YALNEEEDDE FGSGHEGSDG GSSGGGLLGF DLTPLYRAYH
301: IHQTLSLGDT FKQYYYNNRD LQLTSDFQIA GFFIVEDRVL RTGGGLISKL EVETLWDTAV TKMCAVLEDQ FSRMQTANHL LLIKDYVSLL GVSLRRYGYA
401: VDSLLEVLSK HRDKYHELLL SDCRKQITEA LSADKFEQML MKKEYEYSMN VLSFQLQTSE IVPAFPFIAP FSTTVPDCCR IVRSFIEDSV SFMSHGGQLD
501: FYDVVKKYLD RLLGEVLDEA LLKLISTSVH GVSQAMQVAA NMAVFERACD FFFRHAAHLS GVPLRMAERG RRHFPLTKSQ NTAEDTLSGM LKKKIDGFMT
601: LLENVNWTSD DIPQGGNEYM NEVLIYLETL VSTAQQILPA KVLKRVLRDV LAHISEKIVG TLCGDLVKRL SMAAIKGLDV DIQLLDSFTE NLTPLLTDKE
701: AREMKKAFVE IRQMINLLLS SHPENFVNPV IRERSYNALD YRKVATVSEK FRDPSDSIFG TFGTRGSRQN PKNKSLDALI KRLKDVS
101: SALSDSNSKL QSVAAPLLSS LDSLVEAQTV SKNVDLAIGA VTHCVRVMEL VSRANQHLQS GNFYMALKCV DSIESDFMEK TPSSTLKRML ENRIPAIRSY
201: VERKVNKEFG DWLVEIRVVS RNLGQLAIGE ASAARQREEE LRIKQRQAEE QSRLSLRDCV YALNEEEDDE FGSGHEGSDG GSSGGGLLGF DLTPLYRAYH
301: IHQTLSLGDT FKQYYYNNRD LQLTSDFQIA GFFIVEDRVL RTGGGLISKL EVETLWDTAV TKMCAVLEDQ FSRMQTANHL LLIKDYVSLL GVSLRRYGYA
401: VDSLLEVLSK HRDKYHELLL SDCRKQITEA LSADKFEQML MKKEYEYSMN VLSFQLQTSE IVPAFPFIAP FSTTVPDCCR IVRSFIEDSV SFMSHGGQLD
501: FYDVVKKYLD RLLGEVLDEA LLKLISTSVH GVSQAMQVAA NMAVFERACD FFFRHAAHLS GVPLRMAERG RRHFPLTKSQ NTAEDTLSGM LKKKIDGFMT
601: LLENVNWTSD DIPQGGNEYM NEVLIYLETL VSTAQQILPA KVLKRVLRDV LAHISEKIVG TLCGDLVKRL SMAAIKGLDV DIQLLDSFTE NLTPLLTDKE
701: AREMKKAFVE IRQMINLLLS SHPENFVNPV IRERSYNALD YRKVATVSEK FRDPSDSIFG TFGTRGSRQN PKNKSLDALI KRLKDVS
Arabidopsis Description
SEC15BExocyst complex component SEC15B [Source:UniProtKB/Swiss-Prot;Acc:F4JHH5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.