Factsheet for TraesCS3D01G205600.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol, plasma membrane

Predictor Summary:

plastid 3
cytosol 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G200500.1
TraesCS2B01G227800.1
TraesCS2D01G208300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02350.1	TraesCS2A01G200500.1	AT1G10180.1	23495664
AT4G02350.1	TraesCS2B01G227800.1	AT1G10180.1	23495664
AT4G02350.1	TraesCS2D01G208300.1	AT1G10180.1	23495664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G199000.2	Wheat	cytosol	92.18	99.5
TraesCS3B01G232000.1	Wheat	cytosol	91.15	98.39
HORVU0Hr1G006630.1	Barley	cytosol	91.03	93.51
Os01t0351300-01	Rice	plasma membrane	83.45	90.75
Zm00001d009226_P001	Maize	mitochondrion	84.14	90.37
EES02923	Sorghum	cytosol, mitochondrion	83.91	90.12
Zm00001d040788_P001	Maize	cytosol, mitochondrion, plastid	83.45	89.63
GSMUA_Achr3P24060_001	Banana	cytosol	57.7	65.36
VIT_07s0005g00680.t01	Wine grape	cytosol	55.86	60.6
Solyc09g075280.1.1	Tomato	nucleus	55.29	59.83
KRH68203	Soybean	endoplasmic reticulum	54.48	59.4
Bra018558.1-P	Field mustard	cytosol	54.25	59.3
GSMUA_Achr8P06600_001	Banana	cytosol	53.22	59.28
Bra036274.1-P	Field mustard	cytosol	52.76	58.47
CDY65634	Canola	cytosol	51.03	57.81
KRH14016	Soybean	mitochondrion	54.25	57.77
AT4G02350.1	Thale cress	cytosol	52.07	57.56
CDY50392	Canola	cytosol	50.34	57.11
TraesCS2D01G447800.1	Wheat	cytosol	39.08	43.09
TraesCS4D01G277500.1	Wheat	cytosol	37.59	41.39

Protein Annotations

Gene3D:1.10.357.30	Gene3D:1.20.58.670	MapMan:22.6.3.7	ncoils:Coil	InterPro:EXOC6/Sec15	GO:GO:0000003
GO:GO:0000145	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006810	GO:GO:0006904	GO:GO:0007154
GO:GO:0008150	GO:GO:0009506	GO:GO:0009653	GO:GO:0009846	GO:GO:0009856	GO:GO:0009860
GO:GO:0009875	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154
GO:GO:0040007	GO:GO:0060321	GO:GO:0070062	PFAM:PF04091	PIRSF:PIRSF025007	PANTHER:PTHR12702
PANTHER:PTHR12702:SF1	EnsemblPlantsGene:TraesCS3D01G205600	EnsemblPlants:TraesCS3D01G205600.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:+:264140922..264143534

Molecular Weight (calculated)

95429.6 Da

IEP (calculated)

6.906

GRAVY (calculated)

-0.024

Length

870 amino acids

Sequence
(BLAST)

001: MGPTCQLVHA HTSVLSGPTF QPLHASCPDD PLFLLVAIPT VPFPLSCPTR QLPFLPQPQL LQISMRRKLA GDAPASASAG GGSAPSEADL AQLSTAISAG
101: EDLGPFVRRA FACGRPEPLL SSLRAVARDR ESEIEELCRA HFHDFIRAVD DLRSLLADAE VLKGSLSASH SALLSSSAPL LASLESFLAA RALAGNLSSA
201: LASSHRCVRL LALAARANDH LQAGNHSLYL ALRAVDAIDL NLASRPDPLP LPALRRMLLS LVPAVRVHAE REISREFADW MVSIRAASRH LGQVAIGRSA
301: AARQRQEELR SKHRPLEESI TLDDDGAGDL DDFAAATATS DGSDGAAAAS FDLTQLYRAM HIHQTLALGE RFKKYYLENR KLQLTSDFDV IAATPFLESH
401: QVFFAQIAGF FIVEDRVFRT GGGLTSRVDV DALWEAALGK MISVLEDNFS RMQTANHLLL ITDYAALLAA TMRRYSYPVG MLLDVLAKHR DKYHDLLLAD
501: CRRQVAEALA ADKFDQMLMR KEYEYSMNVL AFGIQSSDIT PAFPYVAPFS CTVPDICRIV RSFIEDSVSF MAHGGGGDTY AAVKKYLGRI LSEVVNASIQ
601: KLVDSGSGLS VSQAMQVAAN MSIMERACEF FTRHAAQLCG VPLRAVERGR RDFPLRKSRD AAEALLLRLL CSKVDEFMRQ SDGVNWIADD PPAGGNEYAN
701: EVTIYLETLT STAQQILPLP VLRRVLVAVL VHISERIIAL FLNDSVKRFS ASAVIGIDTD LKMFESFAEN MSSLFLDSHQ DSAASEMKSA LVEPRQLVNL
801: LMSNSPENFL NPVIREKSYN KLDYKKVAII SEKFRDTSES YFSTFGTRGA RQNPKKKSLD TLIKRLREAS

Best Arabidopsis Sequence Match ( AT4G02350.2 )
(BLAST)

001: MQSSKGRRKV GSTTAGAGID SAEKLDELLI SSAICNGEDL GPFVRKTFGT GKPETLLHHL KFFARSKESE IEEVCKAHYQ DFIHAVDDLK SLLSDVESLK
101: SALSDSNSKL QSVAAPLLSS LDSLVEAQTV SKNVDLAIGA VTHCVRVMEL VSRANQHLQS GNFYMALKCV DSIESDFMEK TPSSTLKRML ENRIPAIRSY
201: VERKVNKEFG DWLVEIRVVS RNLGQLAIGE ASAARQREEE LRIKQRQAEE QSRLSLRDCV YALNEEEDDE FGSGHEGSDG GSSGGGLLGF DLTPLYRAYH
301: IHQTLSLGDT FKQYYYNNRD LQLTSDFQIA GFFIVEDRVL RTGGGLISKL EVETLWDTAV TKMCAVLEDQ FSRMQTANHL LLIKDYVSLL GVSLRRYGYA
401: VDSLLEVLSK HRDKYHELLL SDCRKQITEA LSADKFEQML MKKEYEYSMN VLSFQLQTSE IVPAFPFIAP FSTTVPDCCR IVRSFIEDSV SFMSHGGQLD
501: FYDVVKKYLD RLLGEVLDEA LLKLISTSVH GVSQAMQVAA NMAVFERACD FFFRHAAHLS GVPLRMAERG RRHFPLTKSQ NTAEDTLSGM LKKKIDGFMT
601: LLENVNWTSD DIPQGGNEYM NEVLIYLETL VSTAQQILPA KVLKRVLRDV LAHISEKIVG TLCGDLVKRL SMAAIKGLDV DIQLLDSFTE NLTPLLTDKE
701: AREMKKAFVE IRQMINLLLS SHPENFVNPV IRERSYNALD YRKVATVSEK FRDPSDSIFG TFGTRGSRQN PKNKSLDALI KRLKDVS

Arabidopsis Description

SEC15BExocyst complex component SEC15B [Source:UniProtKB/Swiss-Prot;Acc:F4JHH5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.