CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89402
KRH50470

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02350.1	KRG89402	AT1G10180.1	23495664
AT4G02350.1	KRH50470	AT1G10180.1	23495664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68203	Soybean	endoplasmic reticulum	92.78	94.99
VIT_07s0005g00680.t01	Wine grape	cytosol	81.15	82.67
Solyc09g075280.1.1	Tomato	nucleus	77.23	78.48
Bra018558.1-P	Field mustard	cytosol	73.56	75.5
Bra036274.1-P	Field mustard	cytosol	70.87	73.76
AT4G02350.1	Thale cress	cytosol	70.99	73.7
CDY50392	Canola	cytosol	68.3	72.75
CDY65634	Canola	cytosol	68.18	72.53
GSMUA_Achr3P24060_001	Banana	cytosol	61.32	65.23
Zm00001d040788_P001	Maize	cytosol, mitochondrion, plastid	59.12	59.63
EES02923	Sorghum	cytosol, mitochondrion	59.0	59.51
GSMUA_Achr8P06600_001	Banana	cytosol	56.79	59.41
Os01t0351300-01	Rice	plasma membrane	58.02	59.25
Zm00001d009226_P001	Maize	mitochondrion	58.51	59.01
TraesCS3A01G199000.2	Wheat	cytosol	57.89	58.68
TraesCS3B01G232000.1	Wheat	cytosol	57.77	58.56
HORVU0Hr1G006630.1	Barley	cytosol	57.77	55.73
TraesCS3D01G205600.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	57.77	54.25
KRH07372	Soybean	cytosol	45.53	47.21
KRH66189	Soybean	cytosol	45.41	47.08
KRH33282	Soybean	cytosol	45.41	47.02
KRH71637	Soybean	cytosol	45.41	47.02

Protein Annotations

Gene3D:1.10.357.30	Gene3D:1.20.58.670	MapMan:22.6.3.7	UniProt:A0A0R0G6V6	EMBL:ACUP02008488	ncoils:Coil
InterPro:EXOC6/Sec15	EnsemblPlantsGene:GLYMA_14G001400	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006904	GO:GO:0008150	GO:GO:0009987
EnsemblPlants:KRH14016	ProteinID:KRH14016	ProteinID:KRH14016.1	PFAM:PF04091	PIRSF:PIRSF025007	PANTHER:PTHR12702
PANTHER:PTHR12702:SF1	UniParc:UPI0006ED60FD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:153337..159391

Molecular Weight (calculated)

92729.5 Da

IEP (calculated)

6.607

GRAVY (calculated)

-0.208

Length

817 amino acids

Sequence
(BLAST)

001: MWEKGVLRLI LIKGRVSTTM LSSKPPRRKV VPANGDDSAD KLDQLLLSSA ICNNEDLGPF IRKTFASGKP ETLHHHLRHF ARSKESEIEE VCKAHYQDFI
101: LAVDDLRSLL SDVDSLKSSL SDSNSRLQHV ACPLLSSLDA FVETRNVSKN VNLAIDSVRT CVKLMEVCTR ANRHLADDNF YMALKCVDAI EREYLDQTAS
201: STLRRMLEKK IPEIRSYIER KVNKEFGDWL VEIRVVSRNL GQLAIGQASA ARQREEDLRI KQRQAEEQSR LSVRDCIYAL EEEEEDGIVA GGIGEDGGGA
301: AGFDLTSLYR AYHIHQTLGL EDRFKQYYFE NRKLQLTSDF QVSSMTPFLE SHQTFFAQIA GFFVVEDRVL RTGGGLISKM EVENLWDIAV SKMCSVLEDQ
401: FSRMQTANHL LLIKDYVSLL GVTLRRYGYP IDALLDVLSK HRDKYHELLL SDCRKQIAEA VVADKFEQML MKKEYEYSMH VLSFQIQTSD IIPAFPYVAP
501: FSSTVPDCCR IVRSFIEDSV SFMSYGGQLE FYEVVKKYLD RLLSEVLDEA LVKLINTSIN GVSQAMQMAA NMVVLERACD FFFRHAAQLS GVPLRMVERS
601: RRQFPLRKAR DAAEDMLSGL LKAKVDGFMT LIENVNWMCD EAPQSGNEYV NEVIIYLEIL VSTAQQILPS QVLKRVLQEV FAHISEKIVG TLVSDSVKRF
701: NVNAINGIEV DIRLLESFSD NQASLFSDGD VDVLKASLAS SKQLINLLLS NHPENFLNPV IRERSYNTLD HKKVVIVSEK LRDPSDRLFG TFGSRGARQN
801: PKRKSLDTLI KRLRDVS

Best Arabidopsis Sequence Match ( AT4G02350.2 )
(BLAST)

001: MQSSKGRRKV GSTTAGAGID SAEKLDELLI SSAICNGEDL GPFVRKTFGT GKPETLLHHL KFFARSKESE IEEVCKAHYQ DFIHAVDDLK SLLSDVESLK
101: SALSDSNSKL QSVAAPLLSS LDSLVEAQTV SKNVDLAIGA VTHCVRVMEL VSRANQHLQS GNFYMALKCV DSIESDFMEK TPSSTLKRML ENRIPAIRSY
201: VERKVNKEFG DWLVEIRVVS RNLGQLAIGE ASAARQREEE LRIKQRQAEE QSRLSLRDCV YALNEEEDDE FGSGHEGSDG GSSGGGLLGF DLTPLYRAYH
301: IHQTLSLGDT FKQYYYNNRD LQLTSDFQIA GFFIVEDRVL RTGGGLISKL EVETLWDTAV TKMCAVLEDQ FSRMQTANHL LLIKDYVSLL GVSLRRYGYA
401: VDSLLEVLSK HRDKYHELLL SDCRKQITEA LSADKFEQML MKKEYEYSMN VLSFQLQTSE IVPAFPFIAP FSTTVPDCCR IVRSFIEDSV SFMSHGGQLD
501: FYDVVKKYLD RLLGEVLDEA LLKLISTSVH GVSQAMQVAA NMAVFERACD FFFRHAAHLS GVPLRMAERG RRHFPLTKSQ NTAEDTLSGM LKKKIDGFMT
601: LLENVNWTSD DIPQGGNEYM NEVLIYLETL VSTAQQILPA KVLKRVLRDV LAHISEKIVG TLCGDLVKRL SMAAIKGLDV DIQLLDSFTE NLTPLLTDKE
701: AREMKKAFVE IRQMINLLLS SHPENFVNPV IRERSYNALD YRKVATVSEK FRDPSDSIFG TFGTRGSRQN PKNKSLDALI KRLKDVS

Arabidopsis Description

SEC15BExocyst complex component SEC15B [Source:UniProtKB/Swiss-Prot;Acc:F4JHH5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.