CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89402
KRH50470

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02350.1	KRG89402	AT1G10180.1	23495664
AT4G02350.1	KRH50470	AT1G10180.1	23495664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14016	Soybean	mitochondrion	94.99	92.78
VIT_07s0005g00680.t01	Wine grape	cytosol	83.33	82.92
Solyc09g075280.1.1	Tomato	nucleus	78.32	77.74
Bra018558.1-P	Field mustard	cytosol	74.81	75.0
AT4G02350.1	Thale cress	cytosol	72.18	73.19
Bra036274.1-P	Field mustard	cytosol	71.93	73.12
CDY50392	Canola	cytosol	69.8	72.62
CDY65634	Canola	cytosol	69.05	71.74
GSMUA_Achr3P24060_001	Banana	cytosol	62.78	65.23
Zm00001d040788_P001	Maize	cytosol, mitochondrion, plastid	60.15	59.26
EES02923	Sorghum	cytosol, mitochondrion	60.15	59.26
Os01t0351300-01	Rice	plasma membrane	59.4	59.25
GSMUA_Achr8P06600_001	Banana	cytosol	57.89	59.15
Zm00001d009226_P001	Maize	mitochondrion	59.9	59.01
TraesCS3A01G199000.2	Wheat	cytosol	59.52	58.93
TraesCS3B01G232000.1	Wheat	cytosol	59.15	58.56
HORVU0Hr1G006630.1	Barley	cytosol	59.4	55.96
TraesCS3D01G205600.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	59.4	54.48
KRH07372	Soybean	cytosol	46.37	46.95
KRH66189	Soybean	cytosol	46.24	46.83
KRH33282	Soybean	cytosol	46.12	46.64
KRH71637	Soybean	cytosol	46.12	46.64

Protein Annotations

Gene3D:1.10.357.30	Gene3D:1.20.58.670	EntrezGene:100784539	MapMan:22.6.3.7	EMBL:ACUP02002104	ncoils:Coil
InterPro:EXOC6/Sec15	EnsemblPlantsGene:GLYMA_03G215200	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006904	GO:GO:0008150	GO:GO:0009987
UniProt:K7KGC2	EnsemblPlants:KRH68203	ProteinID:KRH68203	ProteinID:KRH68203.1	PFAM:PF04091	PIRSF:PIRSF025007
PANTHER:PTHR12702	PANTHER:PTHR12702:SF1	UniParc:UPI00023C1E17	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:41979781..41982811

Molecular Weight (calculated)

90322.4 Da

IEP (calculated)

6.385

GRAVY (calculated)

-0.220

Length

798 amino acids

Sequence
(BLAST)

001: MLSSKPPRRK VVPANGDDSA DKLDQLLLSS AISNNEDLGP FIRKAFTSGK PETLHHHLRH FARSKESEIE EVCKAHYQDF ILAVDDLRSL LSDVDSLKSS
101: LSDSNSRLQH VARPLLSSLD AFVETRNVSK NVNLAIDSVR TCVKLMEVCT RANRHLADDN FYMALKCVDA IEREYLDQTA SSTLRRMLEK KIPEIRSYIE
201: RKVNKEFGDW LVEIRVVSRN LGQLAIGQAS AARQREEDLR IKQRQAEEQS RLSVRDCIYA LEEEDEDGII AGGIGEDGGG AAGFDLTSLC RAYHIHQTLG
301: LEDRFKQYYF ENRKLQLTSD FQVSSMTPFL ESHQTFFAQI AGFFVVEDRV LRAGGGLISK MEVENLWDIA VSKMCSVLED QFSRMQTANH LLLIKDYVSL
401: LGVTLRRYGY PIDALLDVLS KHRDKYHELL LSDCRKLIAE AVAADKFEQM LMKKEYEYSM NVLSFQIQTS DIIPAFPYVA PFSSTVPDCC RIVRSFIEDS
501: VSFMSYGGQL EFYEVVKKYL DRLLSEVLDE ALVKLINTSI NGVSQAMQMA ANMAVLERAC DFFFRHAAQL SGVPLRMVER SRRNFPLRKA RDAAEEMLSG
601: LLKAKVDGFM TLIENVNWMG DEAPQSGNEY VNEVIIYLEI LVSTAQQILP SQVLKRVLQE VFAHISEKIV GTLVSDSVKR FNVNAITGIE VDIRLLESFA
701: DNQASLFSDG DVDVLRASLA GSKQLINLLL SNHPENFLNP VIRERSYNTL DHKKVVIVSE KLRDPSDRLF GTFGSRGARQ NPKRKSLDTL IKRLRDVS

Best Arabidopsis Sequence Match ( AT4G02350.2 )
(BLAST)

001: MQSSKGRRKV GSTTAGAGID SAEKLDELLI SSAICNGEDL GPFVRKTFGT GKPETLLHHL KFFARSKESE IEEVCKAHYQ DFIHAVDDLK SLLSDVESLK
101: SALSDSNSKL QSVAAPLLSS LDSLVEAQTV SKNVDLAIGA VTHCVRVMEL VSRANQHLQS GNFYMALKCV DSIESDFMEK TPSSTLKRML ENRIPAIRSY
201: VERKVNKEFG DWLVEIRVVS RNLGQLAIGE ASAARQREEE LRIKQRQAEE QSRLSLRDCV YALNEEEDDE FGSGHEGSDG GSSGGGLLGF DLTPLYRAYH
301: IHQTLSLGDT FKQYYYNNRD LQLTSDFQIA GFFIVEDRVL RTGGGLISKL EVETLWDTAV TKMCAVLEDQ FSRMQTANHL LLIKDYVSLL GVSLRRYGYA
401: VDSLLEVLSK HRDKYHELLL SDCRKQITEA LSADKFEQML MKKEYEYSMN VLSFQLQTSE IVPAFPFIAP FSTTVPDCCR IVRSFIEDSV SFMSHGGQLD
501: FYDVVKKYLD RLLGEVLDEA LLKLISTSVH GVSQAMQVAA NMAVFERACD FFFRHAAHLS GVPLRMAERG RRHFPLTKSQ NTAEDTLSGM LKKKIDGFMT
601: LLENVNWTSD DIPQGGNEYM NEVLIYLETL VSTAQQILPA KVLKRVLRDV LAHISEKIVG TLCGDLVKRL SMAAIKGLDV DIQLLDSFTE NLTPLLTDKE
701: AREMKKAFVE IRQMINLLLS SHPENFVNPV IRERSYNALD YRKVATVSEK FRDPSDSIFG TFGTRGSRQN PKNKSLDALI KRLKDVS

Arabidopsis Description

SEC15BExocyst complex component SEC15B [Source:UniProtKB/Swiss-Prot;Acc:F4JHH5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.