Factsheet for VIT_01s0011g01710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069080.2.1	Tomato	nucleus	69.19	69.64
PGSC0003DMT400026847	Potato	nucleus	69.32	69.59
KRH50470	Soybean	cytosol	68.93	68.41
KRG89402	Soybean	cytosol	67.91	68.17
AT1G10180.1	Thale cress	cytosol	60.33	61.12
GSMUA_Achr7P17130_001	Banana	nucleus	52.5	60.68
CDY20653	Canola	cytosol	58.15	59.45
Bra018457.1-P	Field mustard	cytosol	58.79	58.87
TraesCS2D01G208300.1	Wheat	cytosol	58.79	58.87
Os07t0568000-01	Rice	nucleus	58.41	58.86
TraesCS2B01G227800.1	Wheat	cytosol	58.54	58.61
TraesCS2A01G200500.1	Wheat	nucleus	58.41	58.41
CDY31043	Canola	cytosol	58.41	58.41
Zm00001d021828_P004	Maize	nucleus	57.38	56.23
HORVU2Hr1G039170.2	Barley	mitochondrion	59.31	56.0
KXG36501	Sorghum	cytosol	57.38	49.94
VIT_01s0026g01230.t01	Wine grape	cytosol	24.9	28.16
VIT_09s0018g01920.t01	Wine grape	nucleus	27.47	27.83

Protein Annotations

EntrezGene:100249093	wikigene:100249093	MapMan:22.6.3.8	ProteinID:CBI27177	ProteinID:CBI27177.3	ncoils:Coil
InterPro:Cullin_repeat-like_dom_sf	UniProt:D7T9K6	InterPro:Exo84	InterPro:Exo84_C	EMBL:FN595752	GO:GO:0000003
GO:GO:0000145	GO:GO:0001927	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006887	GO:GO:0007154	GO:GO:0008150	GO:GO:0009856	GO:GO:0009875
GO:GO:0009987	GO:GO:0016043	GO:GO:0051601	GO:GO:0060321	EntrezGene:LOC100249093	wikigene:LOC100249093
PFAM:PF16528	PANTHER:PTHR21426	PANTHER:PTHR21426:SF2	SUPFAM:SSF74788	UniParc:UPI000198294B	ArrayExpress:VIT_01s0011g01710
EnsemblPlantsGene:VIT_01s0011g01710	EnsemblPlants:VIT_01s0011g01710.t01	RefSeq:XP_002277090	RefSeq:XP_002277090.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:1529730..1536688

Molecular Weight (calculated)

86996.6 Da

IEP (calculated)

4.449

GRAVY (calculated)

-0.195

Length

779 amino acids

Sequence
(BLAST)

001: MESSEEEDDL DYPINDGITP QSKIDSIYQS NTEKGIRKLC CELLVLKDAV ENLRGNMRTK YLAFLRISDE VVEMEHELIE LQKHISAQGI LVQDLMSGVC
101: RELEEWNKAN GDIHEAQQDP QIGELQDPFP NNIVDAKTIF LEKIDVLLAE HKVEEAIEAL DAEERNSPDL KSSGDTSPTE ASSYRSAFLK RKAMLEDQLV
201: EITEQPLVGT LELKKALSGL IKLGKGPLAH QLLLKSYGSR LQKSIEAFLP ACSSCPKTYS ATLSKLVFSL ISLTTKESGS IFGDDPAYTN RIVQWAEWEI
301: ESFVRLVKEN APPSESISAL RAASICIQAS LSHCSLLESQ GLKLSKLLMV LLRPYIEEVL ELNFRRARRV ILDLDAIDES FPLSPCFASP LSAFATSSDT
401: MLIDSGIRFM YNVNEIVEQL TPLTILHFGG SILTRISQLF AKYVGVLIKA LPGPSEDDNL TELKEDIPFR AETDAQQLAL LGIAFTVAEL LPMAIWRTQN
501: ECKEPGSGPT ENIVHTASAM ESKEWRRHIQ HSLDELRDHF CRQYVLNFIY SREGKTQLNA QIYLNGKGDD LSWDSGPLPS LPFQMLFVKL QQLATVAGDV
601: LLGKEKIQKI LLARLTETVV IWLSDEQEFW GVFEDESAPL RPIGLRQLIL DMHFTVEIAR FAGYSSRHVH QIAAAIIARA IRTFSARGID PQSALPEDEW
701: FVETAKGAIH KLMSDASDTD DEHIIDEHLI DEHMIMHDEM ASDSDDSPSS LSSVESSESF ASANMGDLES PTDLTDPEN

Best Arabidopsis Sequence Match ( AT1G10180.1 )
(BLAST)

001: MESSEEDDEY PFIESITPQS KIDSVHQSLT EKGIRKLCCE LMDLKDAVEN MCGDMRTKYL AFLRISEEAV EMEHELVELR KHISSQGILV QDLMAGVCRE
101: MDDWNRLPGD VHDAEVEEDP LPNEVTDPKS EFLEKIDLLL AEHKVDEALE AMDAEERSSP DLKGSVEMSS YKSAFMERKA VLEDQLLRIA KQPSICVAEL
201: KHALIGLIRL GKGPSAHQLL LKFYATSLRR RIEAFLPSCL TCPNTFPATL SKLVFSNISV ATKESAAMFG DDDNPAYSNK VVQWAEREVE YLVRLVKENA
301: SPSETASALR AASICLQDCL NYCKVLEPQG LFLSKLFLVL FRPYVEEVLE LNFRRARRVI FDLNETDEGL ESPSDFVTIL SEFAIASDTM MTDCSIRFMQ
401: IVQDILEQLT HLVVLHFGES VLTRILQLYD KYIDFLIKAL PGHSDEDGLP ELQDNTVLAR AETDSEQLAL LGAAFTILDE LLPRSLVKVW KLQIENGGGE
501: GENSAALNSS AAPELKEWKR HMVQAFDKLR NYFCLQFVLS FIYSREGLTR LDALIYLTET PDDLHLPSLP FQALFSKLQQ LAIIAGDVLL GKEKLQKILL
601: ARLTETVIIW LSNEQEFWSA FEDESNPLQP SGLQQLILDM NFTVEIARFA GYPFKVVQNH ASVVINRAIN IFSERGINPQ SSLPKTEWFT EAAKSAINRL
701: LMGSEDASEP EEYECEEEEE DDHHIVLPEM DDDSDSEDTS SLSTVDSFES FASASMADLE SPSFTDSES

Arabidopsis Description

EXO84CExocyst complex component EXO84C [Source:UniProtKB/Swiss-Prot;Acc:Q9SY60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.