Factsheet for VIT_03s0038g04270.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56373	Soybean	cytosol	77.65	78.98
KRH62564	Soybean	nucleus	76.54	78.29
Solyc01g104170.2.1	Tomato	plastid	74.02	75.93
PGSC0003DMT400061066	Potato	cytosol	74.3	75.78
PGSC0003DMT400062098	Potato	cytosol	72.07	74.14
TraesCS7D01G266800.1	Wheat	cytosol	59.5	72.7
Zm00001d021126_P002	Maize	extracellular	65.36	72.45
EER97033	Sorghum	cytosol	65.08	72.14
EES15272	Sorghum	cytosol	66.2	70.75
Zm00001d052700_P001	Maize	extracellular	65.08	69.55
TraesCS7B01G164200.1	Wheat	cytosol	64.8	68.44
Os09t0513000-01	Rice	plasma membrane, plastid	62.57	68.09
TraesCS5D01G304000.1	Wheat	cytosol	62.57	67.88
TraesCS5B01G296200.1	Wheat	cytosol	62.57	67.88
TraesCS5A01G296900.1	Wheat	plastid	62.57	67.88
GSMUA_AchrUn_...	Banana	nucleus	64.25	67.85
GSMUA_Achr8P09410_001	Banana	cytosol	63.69	66.86
CDY41654	Canola	cytosol, plastid	62.85	66.77
Solyc10g024330.1.1	Tomato	nucleus	50.0	65.81
CDX72536	Canola	cytosol, plastid	63.41	65.8
AT2G17390.1	Thale cress	cytosol	63.13	65.7
CDY49426	Canola	cytosol	62.01	65.29
CDY24333	Canola	plastid	62.29	65.2
Os03t0851700-01	Rice	plasma membrane	63.69	65.14
CDY24811	Canola	cytosol, plastid	63.13	64.94
Bra010534.1-P	Field mustard	cytosol, plastid	62.57	64.18
CDX69141	Canola	cytosol, plastid	62.01	64.16
CDY40634	Canola	cytosol, plastid	62.29	63.9
Bra017710.1-P	Field mustard	cytosol, plastid	62.29	63.71
CDX75504	Canola	cytosol, plastid	61.45	63.58
Bra011616.1-P	Field mustard	cytosol, plastid	61.45	63.58
AT4G35450.5	Thale cress	cytosol, plastid	61.17	62.57
EER93086	Sorghum	cytosol	60.34	61.54
HORVU5Hr1G078120.2	Barley	plastid	62.01	59.2
HORVU7Hr1G055860.1	Barley	cytosol, mitochondrion	63.41	57.91
TraesCS5D01G545200.1	Wheat	cytosol	61.45	55.28
TraesCS5B01G542600.1	Wheat	nucleus	60.06	54.71
HORVU5Hr1G122820.3	Barley	cytosol	61.73	54.7
TraesCS4A01G328600.1	Wheat	cytosol	60.89	52.15
Os08t0539600-01	Rice	nucleus	27.93	46.95
VIT_06s0009g03440.t01	Wine grape	cytosol	11.73	28.0
Os07t0659100-01	Rice	cytosol	1.4	23.81

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100258947	wikigene:100258947	MapMan:23.1.1.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	ProteinID:CBI37701	ProteinID:CBI37701.3	UniProt:D7U4N2	EMBL:FN596508	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009536	GO:GO:0016020	GO:GO:0030941	GO:GO:0031359
GO:GO:0045036	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100258947	wikigene:LOC100258947
PFAM:PF12796	PIRSF:PIRSF000654	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR44453	SMART:SM00248
SUPFAM:SSF48403	TIGR:TC53110	UniParc:UPI0001BE4F8B	ArrayExpress:VIT_03s0038g04270	EnsemblPlantsGene:VIT_03s0038g04270	EnsemblPlants:VIT_03s0038g04270.t01
RefSeq:XP_002283498	RefSeq:XP_002283498.2	RefSeq:XP_010645415.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:3097731..3102992

Molecular Weight (calculated)

38387.5 Da

IEP (calculated)

4.264

GRAVY (calculated)

-0.527

Length

358 amino acids

Sequence
(BLAST)

001: MASNSDKDTP ADEKTGSAEN SKSDSSSGES HSEQRRAAAA ASVPGAGLPA NPFDFSAMTG LLNDPSIKEL AEQIAKDPAF NQMAEQLQKT FHGAAVEESI
101: PQFDTQQYYS TMQQVMQNPQ FMTMAERLGN ALMQDPSMSS MLENLANPTH KDQLEERMAR IKEDPSLKPI LDEIETGGPA AMMRYWNDKD VLQKLGEAMG
201: LAVSGDAAAS ADNSGLDEAE ELANEDESIA HHHSESIVHD TASVGDVEGL KNALASGADK DEEDSEGRTA LHFACGYGEV KCAQILVEAG ATVDALDKNK
301: NTALHYAAGY GRKECVALLL ENGAAVTLQN MDGKTPIDVA KLNNQHEVLK LLEKDAFL

Best Arabidopsis Sequence Match ( AT2G17390.1 )
(BLAST)

001: MASSSEKTPL IPSDEKNDTK EESKSTTKPE SGSGAPPSPS PTDPGLDFNA FDFSGMAGIL NDPSIKELAE QIAKDPSFNQ LAEQLQRSVP TGSHEGGLPN
101: FDPQQYMQTM QQVMENPEFR TMAERLGNAL VQDPQMSPFL EALGNPAASE QFAERMAQMK EDPELKPILA EIDAGGPSAM MKYWNDKDVL AKLGEAMGIA
201: VGADQTVAAE PEEAEEGEEE ESIVHQTASL GDVEGLKAAL ASGGNKDEED SEGRTALHFA CGYGEVRCAQ VLLDAGANAN AIDKNKNTPL HYAAGYGRKE
301: CVSLLLENGA AVTQQNMDNK NPIDVARLNN QLDVVKLLEK DAFL

Arabidopsis Description

AKR2BAnkyrin repeat domain-containing protein 2B [Source:UniProtKB/Swiss-Prot;Acc:Q29Q26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.