CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56373	Soybean	cytosol	95.43	94.89
VIT_03s0038g04270.t01	Wine grape	cytosol	78.29	76.54
Solyc01g104170.2.1	Tomato	plastid	73.14	73.35
PGSC0003DMT400061066	Potato	cytosol	73.14	72.93
TraesCS7D01G266800.1	Wheat	cytosol	60.29	72.01
PGSC0003DMT400062098	Potato	cytosol	71.43	71.84
EER97033	Sorghum	cytosol	65.71	71.21
Zm00001d021126_P002	Maize	extracellular	65.43	70.9
EES15272	Sorghum	cytosol	66.57	69.55
Zm00001d052700_P001	Maize	extracellular	65.71	68.66
Os09t0513000-01	Rice	plasma membrane, plastid	63.71	67.78
TraesCS7B01G164200.1	Wheat	cytosol	65.43	67.55
GSMUA_AchrUn_...	Banana	nucleus	65.14	67.26
GSMUA_Achr8P09410_001	Banana	cytosol	65.14	66.86
TraesCS5A01G296900.1	Wheat	plastid	62.57	66.36
TraesCS5B01G296200.1	Wheat	cytosol	62.29	66.06
TraesCS5D01G304000.1	Wheat	cytosol	62.29	66.06
CDY41654	Canola	cytosol, plastid	62.57	64.99
Os03t0851700-01	Rice	plasma membrane	63.71	63.71
CDY24811	Canola	cytosol, plastid	62.86	63.22
CDX72536	Canola	cytosol, plastid	62.29	63.19
AT2G17390.1	Thale cress	cytosol	61.43	62.5
Bra010534.1-P	Field mustard	cytosol, plastid	62.29	62.46
CDX69141	Canola	cytosol, plastid	61.71	62.43
CDY40634	Canola	cytosol, plastid	62.0	62.18
Bra017710.1-P	Field mustard	cytosol, plastid	62.0	62.0
CDX75504	Canola	cytosol, plastid	61.14	61.85
Bra011616.1-P	Field mustard	cytosol, plastid	61.14	61.85
CDY49426	Canola	cytosol	60.0	61.76
Solyc10g024330.1.1	Tomato	nucleus	48.0	61.76
CDY24333	Canola	plastid	60.29	61.7
EER93086	Sorghum	cytosol	61.71	61.54
AT4G35450.5	Thale cress	cytosol, plastid	61.14	61.14
HORVU5Hr1G078120.2	Barley	plastid	61.71	57.6
HORVU7Hr1G055860.1	Barley	cytosol, mitochondrion	64.0	57.14
TraesCS5D01G545200.1	Wheat	cytosol	60.0	52.76
TraesCS5B01G542600.1	Wheat	nucleus	58.86	52.42
HORVU5Hr1G122820.3	Barley	cytosol	60.0	51.98
TraesCS4A01G328600.1	Wheat	cytosol	59.43	49.76
Os08t0539600-01	Rice	nucleus	25.71	42.25
KRH43442	Soybean	cytosol	12.29	27.39
Os07t0659100-01	Rice	cytosol	1.43	23.81

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100797622	MapMan:23.1.1.1	EMBL:ACUP02002310	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EMBL:BT095653	UniProt:C6TDJ3	EnsemblPlantsGene:GLYMA_04G116500	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009536	GO:GO:0016020	GO:GO:0030941	GO:GO:0031359	GO:GO:0045036
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	ProteinID:KRH62563.1	EnsemblPlants:KRH62564	ProteinID:KRH62564
ProteinID:KRH62564.1	PFAM:PF12796	PIRSF:PIRSF000654	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR44453
SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI0001B15BEB	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:13488183..13494378

Molecular Weight (calculated)

37630.7 Da

IEP (calculated)

4.258

GRAVY (calculated)

-0.599

Length

350 amino acids

Sequence
(BLAST)

001: MASDSKKDFP ADDKAGTAEN KASKDETSSK DSPAAQRATT ATSGPATGFP GNPFDFSAMS GLLNDPSIKE LAEQIAKDPS FNQMAEQLQK TFQGAPQDAM
101: PSFDNQQYFS TMQQVMQNPN FMTMAERLGN ALMQDPSMSA MLESFSNPSN KDQLEERMTR IKEDPSLKHI LEEIETGGPA AMMRYWNDEE VLRKLGQAMG
201: LANSGDVGAS AENSGADETE DLGNEDESIV HHTASVGDVE GLKNALAAGA DKDEEDSEGR TALHFACGYG EVKCAQVLLE AGAKVDALDK NKNTALHYAA
301: GYGRKECVAL LLENGAAVTL QNMDGKTPID VAKLNNQNEV LKLLEKDAFL

Best Arabidopsis Sequence Match ( AT2G17390.1 )
(BLAST)

001: MASSSEKTPL IPSDEKNDTK EESKSTTKPE SGSGAPPSPS PTDPGLDFNA FDFSGMAGIL NDPSIKELAE QIAKDPSFNQ LAEQLQRSVP TGSHEGGLPN
101: FDPQQYMQTM QQVMENPEFR TMAERLGNAL VQDPQMSPFL EALGNPAASE QFAERMAQMK EDPELKPILA EIDAGGPSAM MKYWNDKDVL AKLGEAMGIA
201: VGADQTVAAE PEEAEEGEEE ESIVHQTASL GDVEGLKAAL ASGGNKDEED SEGRTALHFA CGYGEVRCAQ VLLDAGANAN AIDKNKNTPL HYAAGYGRKE
301: CVSLLLENGA AVTQQNMDNK NPIDVARLNN QLDVVKLLEK DAFL

Arabidopsis Description

AKR2BAnkyrin repeat domain-containing protein 2B [Source:UniProtKB/Swiss-Prot;Acc:Q29Q26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.