Factsheet for Solyc01g104170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 3
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061066	Potato	cytosol	98.57	98.01
Solyc10g024330.1.1	Tomato	nucleus	58.74	75.37
VIT_03s0038g04270.t01	Wine grape	cytosol	75.93	74.02
KRH62564	Soybean	nucleus	73.35	73.14
KRH56373	Soybean	cytosol	73.07	72.44
Solyc10g024340.1.1	Tomato	extracellular	20.92	72.28
CDX72536	Canola	cytosol, plastid	63.9	64.64
CDY41654	Canola	cytosol, plastid	61.89	64.09
AT2G17390.1	Thale cress	cytosol	63.04	63.95
CDY49426	Canola	cytosol	62.18	63.82
CDY24333	Canola	plastid	62.46	63.74
CDY24811	Canola	cytosol, plastid	63.32	63.51
CDX75504	Canola	cytosol, plastid	62.75	63.29
CDX69141	Canola	cytosol, plastid	62.75	63.29
Bra011616.1-P	Field mustard	cytosol, plastid	62.75	63.29
Bra010534.1-P	Field mustard	cytosol, plastid	63.04	63.04
AT4G35450.5	Thale cress	cytosol, plastid	62.46	62.29
CDY40634	Canola	cytosol, plastid	61.03	61.03
Bra017710.1-P	Field mustard	cytosol, plastid	61.03	60.86
Solyc04g008580.2.1	Tomato	cytosol	10.89	32.48

Protein Annotations

Gene3D:1.25.40.20	MapMan:23.1.1.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009536	GO:GO:0016020	GO:GO:0030941	GO:GO:0031359
GO:GO:0045036	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:K4B1Z2	PFAM:PF12796
PIRSF:PIRSF000654	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR44453	SMART:SM00248	SUPFAM:SSF48403
EnsemblPlantsGene:Solyc01g104170.2	EnsemblPlants:Solyc01g104170.2.1	UniParc:UPI00027687E7	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:92632696..92637507

Molecular Weight (calculated)

37150.3 Da

IEP (calculated)

4.154

GRAVY (calculated)

-0.524

Length

349 amino acids

Sequence
(BLAST)

001: MSEGEKALPT ASKDEKSGAA ESKKSPESST VEAPSGEGRT ASAAAGAGVQ NPFDFSAMSG LLNDPSIKEL AEQIAKDPAF NQMAEQLQKT FQGAAVEESV
101: PNFDSQQYYS TMQQVMQNPQ FMTMAERLGN ALMQDPSMSG MLESLSNPAQ KEQLEERMAR IKEDPSLKPI LEEIESGGPA AMMRYWNDQD VLKKIGEAMG
201: FAAGGEGATS SEIPGPDETE EANEDESVVH QCASVGDAEG LKAALAAGAD KDEEDSEGRT ALHFACGYGE EKCAQLLVEA GAKVDALDKN KNTALHYAAG
301: YGRKECVALL LENGAAVTLQ NLDGKTPIDV AKLNNQQDVL KLLEKDAFL

Best Arabidopsis Sequence Match ( AT2G17390.1 )
(BLAST)

001: MASSSEKTPL IPSDEKNDTK EESKSTTKPE SGSGAPPSPS PTDPGLDFNA FDFSGMAGIL NDPSIKELAE QIAKDPSFNQ LAEQLQRSVP TGSHEGGLPN
101: FDPQQYMQTM QQVMENPEFR TMAERLGNAL VQDPQMSPFL EALGNPAASE QFAERMAQMK EDPELKPILA EIDAGGPSAM MKYWNDKDVL AKLGEAMGIA
201: VGADQTVAAE PEEAEEGEEE ESIVHQTASL GDVEGLKAAL ASGGNKDEED SEGRTALHFA CGYGEVRCAQ VLLDAGANAN AIDKNKNTPL HYAAGYGRKE
301: CVSLLLENGA AVTQQNMDNK NPIDVARLNN QLDVVKLLEK DAFL

Arabidopsis Description

AKR2BAnkyrin repeat domain-containing protein 2B [Source:UniProtKB/Swiss-Prot;Acc:Q29Q26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.