Factsheet for VIT_17s0000g07300.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115110.2.1	Tomato	plastid	82.3	81.79
PGSC0003DMT400063336	Potato	mitochondrion	81.37	80.86
KRH63239	Soybean	mitochondrion	79.81	80.31
KRH54686	Soybean	mitochondrion	80.12	79.63
GSMUA_Achr9P07120_001	Banana	mitochondrion	77.33	77.09
TraesCS1B01G148500.1	Wheat	mitochondrion	77.64	76.69
TraesCS1D01G132700.1	Wheat	golgi, unclear	77.02	76.07
TraesCS1A01G138800.1	Wheat	golgi, unclear	77.02	76.07
EER95278	Sorghum	mitochondrion	77.33	75.45
CDY19433	Canola	mitochondrion	76.09	75.38
Os10t0320400-01	Rice	mitochondrion	75.78	75.31
Bra021826.1-P	Field mustard	mitochondrion	74.84	75.08
CDY23771	Canola	mitochondrion	74.84	75.08
Bra005531.1-P	Field mustard	mitochondrion	75.78	75.08
CDY17130	Canola	mitochondrion	75.78	75.08
CDX84716	Canola	mitochondrion	75.78	75.08
CDX79484	Canola	mitochondrion	75.78	75.08
AT2G33040.1	Thale cress	mitochondrion	75.78	75.08
Bra022908.1-P	Field mustard	mitochondrion	75.16	74.46
CDY37753	Canola	mitochondrion	57.45	71.98
HORVU7Hr1G085110.1	Barley	cytosol	33.54	52.17
CDX88259	Canola	nucleus	35.09	26.1
CDY72042	Canola	cytosol	33.54	25.29
VIT_19s0090g00480.t01	Wine grape	mitochondrion	21.12	22.08
Zm00001d010316_P001	Maize	cytosol	4.97	21.33
Bra015765.1-P	Field mustard	nucleus	32.92	20.95
Zm00001d044380_P001	Maize	cytosol	9.63	18.79

Protein Annotations

Gene3D:1.10.287.80	EntrezGene:100246670	wikigene:100246670	MapMan:2.4.6.2.3	Gene3D:3.40.1380.10	EMBL:AM443302
InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS	ProteinID:CAN80676	ProteinID:CAN80676.1	ProteinID:CBI15122
ProteinID:CBI15122.3	UniProt:D7SI12	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006754	GO:GO:0006810
GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986
GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	GO:GO:0099132
EntrezGene:LOC100246670	wikigene:LOC100246670	PFAM:PF00231	PIRSF:PIRSF039089	PRINTS:PR00126	ScanProsite:PS00153
PANTHER:PTHR11693	PANTHER:PTHR11693:SF26	SUPFAM:SSF52943	TIGR:TC68806	TIGRFAMs:TIGR01146	UniParc:UPI00015C8512
ArrayExpress:VIT_17s0000g07300	EnsemblPlantsGene:VIT_17s0000g07300	EnsemblPlants:VIT_17s0000g07300.t01	unigene:Vvi.6849	RefSeq:XP_002284053	RefSeq:XP_002284053.1

Description

ATP synthase subunit gamma [Source:UniProtKB/TrEMBL;Acc:D7SI12]

Coordinates

chr17:+:8166195..8174024

Molecular Weight (calculated)

35221.6 Da

IEP (calculated)

9.724

GRAVY (calculated)

-0.198

Length

322 amino acids

Sequence
(BLAST)

001: MAMAAFRREG RRFAPLITPR PIAAVRSSPI PEEQAPLGVR SISTQIVRNR MKSVKNIQKI TKAMKMVAAS KLRAIQTRAE NSRGLWQPFT VLLGDSPSVD
101: VKKNVIVTIS SDKGLCGGIN STSVKISKAL HKFTSGPEKG TKYVVLGEKA KAQLMRDSKK DIELCITELQ KNPLNYTQVS VLADEILKNV EYDALRIVFN
201: KFRSIISFVP TTSTVLSPEV VEREAEAGGK LGDLDSYEIE GGETKGEILQ NLAEFQFSCV LFNAVLENAC SEQGARMSAM DSSSRNAGDM LDRLTLTYNR
301: TRQAAITTEL TEIISGASAL EG

Best Arabidopsis Sequence Match ( AT2G33040.1 )
(BLAST)

001: MAMAVFRREG RRLLPSIAAR PIAAIRSPLS SDQEEGLLGV RSISTQVVRN RMKSVKNIQK ITKAMKMVAA SKLRAVQGRA ENSRGLWQPF TALLGDNPSI
101: DVKKSVVVTL SSDKGLCGGI NSTVVKVSRA LYKLNAGPEK EVQFVIVGEK AKAIMFRDSK NDIVLSVTEL NKNPLNYAQV SVLADDILKN VEFDALRIVY
201: NKFHSVVAFL PTVSTVLSPE IIEKESEIGG KLGELDSYEI EGGETKGEIL QNLAEFQFSC VMFNAVLENA CSEMGARMSA MDSSSRNAGE MLDRLTLTYN
301: RTRQASITTE LIEIISGASA LEAAK

Arabidopsis Description

ATPCATP synthase subunit gamma, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96250]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.