CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88259	Canola	nucleus	62.53	61.66
Bra015765.1-P	Field mustard	nucleus	50.59	42.69
HORVU7Hr1G085110.1	Barley	cytosol	19.2	39.61
CDY23771	Canola	mitochondrion	28.34	37.69
CDX88260	Canola	nucleus	13.35	37.01
CDX79484	Canola	mitochondrion	27.87	36.62
CDY19433	Canola	mitochondrion	27.87	36.62
CDY17130	Canola	mitochondrion	27.87	36.62
CDX84716	Canola	mitochondrion	27.87	36.62
VIT_17s0000g07300.t01	Wine grape	mitochondrion	25.29	33.54
KRH63239	Soybean	mitochondrion	24.82	33.12
KRH54686	Soybean	mitochondrion	25.06	33.02
CDY37753	Canola	mitochondrion	19.2	31.91
TraesCS1D01G132700.1	Wheat	golgi, unclear	23.89	31.29
TraesCS1B01G148500.1	Wheat	mitochondrion	23.89	31.29
TraesCS1A01G138800.1	Wheat	golgi, unclear	23.89	31.29
PGSC0003DMT400063336	Potato	mitochondrion	23.65	31.17
Os10t0320400-01	Rice	mitochondrion	23.65	31.17
GSMUA_Achr9P07120_001	Banana	mitochondrion	23.42	30.96
EER95278	Sorghum	mitochondrion	23.89	30.91
Solyc03g115110.2.1	Tomato	plastid	22.95	30.25
CDX94569	Canola	plastid	12.88	14.67
CDY16654	Canola	plastid	12.65	14.4
CDX96834	Canola	plastid	12.65	14.25
CDX83971	Canola	plastid	12.65	14.25
CDY21312	Canola	plastid	11.71	13.37
CDX90874	Canola	plastid	11.71	13.37
Zm00001d044380_P001	Maize	cytosol	4.22	10.91
CDY33548	Canola	cytosol, mitochondrion	3.04	10.32
Zm00001d010316_P001	Maize	cytosol	1.64	9.33
CDX97316	Canola	plastid	6.09	5.47

Protein Annotations

Gene3D:1.10.287.80	Gene3D:3.40.1380.10	Gene3D:3.90.70.10	MapMan:35.1	GO:A0A078K2A2	UniProt:A0A078K2A2
InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	EnsemblPlants:CDY72042	ProteinID:CDY72042	ProteinID:CDY72042.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986
GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	GO:GO:0099132	EnsemblPlantsGene:GSBRNA2T00023377001
PFAM:PF00231	PRINTS:PR00126	PANTHER:PTHR11693	PANTHER:PTHR11693:SF26	InterPro:Papain_like_cys_pep_sf	SUPFAM:SSF52943
SUPFAM:SSF54001	UniParc:UPI0004EDEDF4	SEG:seg	:	:	:

Description

BnaAnng39740DBnaAnng39740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K2A2]

Coordinates

chrLK048692:+:356..2271

Molecular Weight (calculated)

47292.2 Da

IEP (calculated)

6.359

GRAVY (calculated)

-0.343

Length

427 amino acids

Sequence
(BLAST)

001: MSDRVTYRDM GIMEEVLNQR QKQVCWAISL TRQLAALLKL RGQLNINASL SIQYLINKVG SSLFGAQMPR PWNGSVRSLE TAIPFLVNGT VLENLVPLRQ
101: FDLQSSTPEN HVLGERRYRA VRIVVHRIDE YRDEAAFEAD LLRCLHQSPV AAVIKLYPSY GHITGNQIYR QRTSERDEAT PLKHSMLYAF GTPYWEFQDS
201: SGKPKGGVAT KAVSVDASHK RPKKVHKRLS LGPGKQSKSH KLSQGLWSSN STSREAGSFV RPISPKSLVP SASAFENMGE SDDDIAELDA SYLQTNGYLP
301: PDATEEQISM AAASMIRSHS LSEFDALCIV YNKFHSVLSP EIIEKESEVG GKLGELDSCE IEAGETKGEI LQNLAEFQFS CVMFNAVLEN ACSEMGAGMS
401: AMDSSSRNAG EMLDRLTLAY NRELEAA

Best Arabidopsis Sequence Match ( AT2G33040.1 )
(BLAST)

001: MAMAVFRREG RRLLPSIAAR PIAAIRSPLS SDQEEGLLGV RSISTQVVRN RMKSVKNIQK ITKAMKMVAA SKLRAVQGRA ENSRGLWQPF TALLGDNPSI
101: DVKKSVVVTL SSDKGLCGGI NSTVVKVSRA LYKLNAGPEK EVQFVIVGEK AKAIMFRDSK NDIVLSVTEL NKNPLNYAQV SVLADDILKN VEFDALRIVY
201: NKFHSVVAFL PTVSTVLSPE IIEKESEIGG KLGELDSYEI EGGETKGEIL QNLAEFQFSC VMFNAVLENA CSEMGARMSA MDSSSRNAGE MLDRLTLTYN
301: RTRQASITTE LIEIISGASA LEAAK

Arabidopsis Description

ATPCATP synthase subunit gamma, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96250]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.