CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79139
CDX82925

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04640.1	CDX79139	AT4G22240.1	24937144
AT4G04640.1	CDX82925	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90874	Canola	plastid	100.0	100.0
CDY16654	Canola	plastid	90.64	90.4
CDX94569	Canola	plastid	90.11	89.87
AT4G04640.1	Thale cress	plastid	88.5	88.74
GSMUA_Achr2P13970_001	Banana	mitochondrion	53.74	82.38
PGSC0003DMT400042499	Potato	extracellular, plastid	80.75	80.11
Solyc02g080540.1.1	Tomato	plastid	80.48	79.84
KRH20854	Soybean	plastid	79.41	79.2
KRH11433	Soybean	nucleus, plastid	79.41	79.2
Zm00001d006475_P001	Maize	cytosol, mitochondrion	45.99	73.82
KXG36319	Sorghum	plastid	70.32	73.06
Os07t0513000-01	Rice	plastid	69.79	72.91
Zm00001d021620_P001	Maize	plastid	69.79	72.7
TraesCS2B01G273900.1	Wheat	plastid	66.84	69.83
TraesCS2A01G223600.1	Wheat	plastid	66.84	69.83
TraesCS2D01G229600.1	Wheat	plastid	66.84	69.64
CDX83971	Canola	plastid	64.44	63.59
CDX96834	Canola	plastid	63.64	62.8
CDX97316	Canola	plastid	51.87	40.84
EES05204	Sorghum	plastid	18.45	32.39
CDY23771	Canola	mitochondrion	25.4	29.59
CDX79484	Canola	mitochondrion	25.4	29.23
CDY19433	Canola	mitochondrion	25.4	29.23
CDX84716	Canola	mitochondrion	25.4	29.23
CDY17130	Canola	mitochondrion	25.13	28.92
CDY37753	Canola	mitochondrion	18.45	26.85
CDY33548	Canola	cytosol, mitochondrion	6.42	19.05
CDX88260	Canola	nucleus	7.75	18.83
CDX88259	Canola	nucleus	14.17	12.24
CDY72042	Canola	cytosol	13.37	11.71

Protein Annotations

MapMan:1.1.9.2.3	GO:A0A078DQX4	UniProt:A0A078DQX4	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS
EnsemblPlants:CDY21312	ProteinID:CDY21312	ProteinID:CDY21312.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787
GO:GO:0045261	GO:GO:0046933	GO:GO:0099132	EnsemblPlantsGene:GSBRNA2T00015652001	HAMAP:MF_00815	PFAM:PF00231
PRINTS:PR00126	ScanProsite:PS00153	PANTHER:PTHR11693	PANTHER:PTHR11693:SF23	SUPFAM:SSF52943	TIGRFAMs:TIGR01146
UniParc:UPI00025404AF	SEG:seg	:	:	:	:

Description

BnaC03g29960DBnaC03g29960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078DQX4]

Coordinates

chrLK032119:-:495958..497538

Molecular Weight (calculated)

41099.5 Da

IEP (calculated)

7.292

GRAVY (calculated)

-0.136

Length

374 amino acids

Sequence
(BLAST)

001: MACTNLTTMY LSSKPSLSDS SSLSFRSVLN PLPLPNHNSS PSRSSSVSPI QSSLRELRDR IDSVKNTQKI TEAMKLVAAA KVRRAQEAVV NGRPFSETLV
101: EVLYNINEQL QTDDIDVPLT KIRPVKKVAL VVVTGDRGLC GGFNNFIIKK AEARIKELQG LGLDYTVISV GKKGNSYFLR RPYIPVDKYL EAGTLPTAKE
201: AQAVADDVFS LFISEEVDKV ELLYTKFVSL VKSEPVIHTL LPLSPKGEIC DINGNCVDAA EDELFRLTTK EGKLTVERET FRTPTADFSP ILQFEQDPVQ
301: ILDALLPLYL NSQILRALQE SLASELAARM SAMSSASDNA SDLKKSLSMV YNRKRQAKIT GEILEIVAGA NAQA

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.