Factsheet for Zm00001d006475_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003470_P001
Zm00001d025574_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04640.1	Zm00001d003470_P001	AT4G22240.1	24937144
AT4G04640.1	Zm00001d025574_P001	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021620_P001	Maize	plastid	92.7	60.17
KXG36319	Sorghum	plastid	91.85	59.44
Os07t0513000-01	Rice	plastid	89.7	58.38
TraesCS2B01G273900.1	Wheat	plastid	85.84	55.87
TraesCS2A01G223600.1	Wheat	plastid	85.84	55.87
TraesCS2D01G229600.1	Wheat	plastid	85.84	55.71
KRH11433	Soybean	nucleus, plastid	76.39	47.47
GSMUA_Achr2P13970_001	Banana	mitochondrion	49.36	47.13
KRH20854	Soybean	plastid	75.54	46.93
Bra000802.1-P	Field mustard	plastid	73.82	45.99
CDY21312	Canola	plastid	73.82	45.99
CDX90874	Canola	plastid	73.82	45.99
CDY16654	Canola	plastid	73.82	45.87
CDX94569	Canola	plastid	73.82	45.87
Bra029511.1-P	Field mustard	plastid	73.82	45.87
AT4G04640.1	Thale cress	plastid	73.39	45.84
PGSC0003DMT400042499	Potato	extracellular, plastid	73.39	45.36
Solyc02g080540.1.1	Tomato	plastid	73.39	45.36
Bra018503.1-P	Field mustard	plastid	73.82	34.13
Zm00001d048091_P002	Maize	mitochondrion	23.61	16.67
Zm00001d028207_P001	Maize	cytosol, mitochondrion, plastid	22.32	13.61
Zm00001d010316_P001	Maize	cytosol	3.86	12.0
Zm00001d044380_P001	Maize	cytosol	7.73	10.91

Protein Annotations

MapMan:1.1.9.2.3	Gene3D:1.10.287.80	Gene3D:3.40.1380.10	UniProt:A0A1D6EWW7	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046933
GO:GO:0099132	ProteinID:ONM23987.1	PFAM:PF00231	PRINTS:PR00126	PANTHER:PTHR11693	PANTHER:PTHR11693:SF23
SUPFAM:SSF52943	UniParc:UPI000842E3BC	EnsemblPlantsGene:Zm00001d006475	EnsemblPlants:Zm00001d006475_P001	EnsemblPlants:Zm00001d006475_T001	SEG:seg

Description

ATP synthase gamma chain 1 chloroplastic

Coordinates

chr2:-:209348328..209417348

Molecular Weight (calculated)

26080.5 Da

IEP (calculated)

4.892

GRAVY (calculated)

-0.108

Length

233 amino acids

Sequence
(BLAST)

001: MVRCSLQELR SRIDSIRNTR KIKEAMKLVA AAKVRPAQEA VVSSRPFSEA LVEKGNAYFQ HRPYIPLEQD LEVNGVPTVK DSQAICDLVY SLFISEEVDK
101: VELLYSKFVS LVRSDPIIQT LLPMSPKGEI CDVNGVCVDA TEDELFRLTT KEGKLTVEHE KVKIETQPFS PVVHFEQDPV QILDALLPLY LNSQLLRALQ
201: ESLASELAAQ MSAMSSATDN AIELRKNLSI AYN

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.