Factsheet for Bra018503.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013602.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04640.1	Bra013602.1-P	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029511.1-P	Field mustard	plastid	64.68	86.93
Bra000802.1-P	Field mustard	plastid	63.29	85.29
AT4G04640.1	Thale cress	plastid	63.1	85.25
GSMUA_Achr2P13970_001	Banana	mitochondrion	38.29	79.1
PGSC0003DMT400042499	Potato	extracellular, plastid	58.33	77.98
Solyc02g080540.1.1	Tomato	plastid	58.13	77.72
KRH20854	Soybean	plastid	56.94	76.53
KRH11433	Soybean	nucleus, plastid	56.75	76.27
Zm00001d006475_P001	Maize	cytosol, mitochondrion	34.13	73.82
Os07t0513000-01	Rice	plastid	49.4	69.55
KXG36319	Sorghum	plastid	49.4	69.17
Zm00001d021620_P001	Maize	plastid	49.21	69.08
TraesCS2D01G229600.1	Wheat	plastid	47.62	66.85
TraesCS2A01G223600.1	Wheat	plastid	47.42	66.76
TraesCS2B01G273900.1	Wheat	plastid	47.42	66.76
Bra016652.1-P	Field mustard	plastid	45.63	60.69
EES05204	Sorghum	plastid	12.9	30.52
Bra021826.1-P	Field mustard	mitochondrion	17.86	28.04
Bra005531.1-P	Field mustard	mitochondrion	18.06	28.0
Bra022908.1-P	Field mustard	mitochondrion	17.86	27.69
Bra015765.1-P	Field mustard	nucleus	10.32	10.28

Protein Annotations

MapMan:1.1.9.2.3	MapMan:19.3.3.1	Gene3D:3.10.20.90	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:Atg8-like
EnsemblPlantsGene:Bra018503	EnsemblPlants:Bra018503.1	EnsemblPlants:Bra018503.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787
GO:GO:0045261	GO:GO:0046933	GO:GO:0099132	UniProt:M4DPR2	HAMAP:MF_00815	PFAM:PF00231
PFAM:PF02991	PRINTS:PR00126	PANTHER:PTHR11693	PANTHER:PTHR11693:SF23	SUPFAM:SSF52943	SUPFAM:SSF54236
TIGRFAMs:TIGR01146	UniParc:UPI0002548113	InterPro:Ubiquitin-like_domsf	SEG:seg	:	:

Description

AT4G04640 (E=2e-150) ATPC1 | ATPC1; enzyme regulator

Coordinates

chrA05:-:8728727..8735545

Molecular Weight (calculated)

55938.2 Da

IEP (calculated)

8.652

GRAVY (calculated)

-0.196

Length

504 amino acids

Sequence
(BLAST)

001: MWVSSKLSVS DSSSLSFRSI LNPLPLPNHN SSPSRSSSVS PIQSSLRELR DRIDSVKNTQ KITEAMKLVA AAKVRRAQEA VVNGRPFSET LVEVLYNINE
101: QLQTDDIDVP LTKIRPVKKV ALVVVTGDRG LCGGFNNFII KKAEARIKEL QGLGLDYTVI SVGKKGNSYF LRRPYIPVDK YLEAGTLPTA KEAQAVADDV
201: FSLFISEEVD KVELLYTKFV SLVKSEPVIH TLLPLSPKGE ICDINGNCVD AAEDELFRLT TKEGKLTVER ETFRTPTADF SPILQFEQDP VQILDALLPL
301: YLNSQILRAL QESLASELAA RMSAMSSASD NASDLKKSLS MVYNRKRQAK ITGFDHRTLV SLDHRFASSS SLDTDRIAMA KNSFKLSNPL EVRMAESTRI
401: REKYQDRVPV IVEKAGQSDV PDIDKKKYLV PADLTVGQFV YVVRKRIKLG AEKAIFVFVK NTLPPTAALM SAIYEEHKDE DGFLYMTYSG ENTFGSASAN
501: IALP

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.