Factsheet for GSMUA_Achr2P13970_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P12980_001
GSMUA_Achr4P20110_001
GSMUA_Achr7P05510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04640.1	GSMUA_Achr3P12980_001	AT4G22240.1	24937144
AT4G04640.1	GSMUA_Achr4P20110_001	AT4G22240.1	24937144
AT4G04640.1	GSMUA_Achr7P05510_001	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11433	Soybean	nucleus, plastid	84.84	55.2
KRH20854	Soybean	plastid	84.43	54.93
AT4G04640.1	Thale cress	plastid	83.2	54.42
Bra000802.1-P	Field mustard	plastid	82.38	53.74
CDY21312	Canola	plastid	82.38	53.74
CDX90874	Canola	plastid	82.38	53.74
CDY16654	Canola	plastid	82.38	53.6
Bra029511.1-P	Field mustard	plastid	82.38	53.6
PGSC0003DMT400042499	Potato	extracellular, plastid	82.79	53.58
CDX94569	Canola	plastid	81.97	53.33
Solyc02g080540.1.1	Tomato	plastid	82.38	53.32
Zm00001d021620_P001	Maize	plastid	77.87	52.92
Os07t0513000-01	Rice	plastid	77.46	52.79
KXG36319	Sorghum	plastid	77.05	52.22
GSMUA_Achr4P25100_001	Banana	plastid	49.59	50.84
TraesCS2A01G223600.1	Wheat	plastid	73.77	50.28
TraesCS2B01G273900.1	Wheat	plastid	73.77	50.28
TraesCS2D01G229600.1	Wheat	plastid	73.77	50.14
Zm00001d006475_P001	Maize	cytosol, mitochondrion	47.13	49.36
Bra018503.1-P	Field mustard	plastid	79.1	38.29
GSMUA_Achr9P07120_001	Banana	mitochondrion	25.41	19.2
EES05204	Sorghum	plastid	14.34	16.43

Protein Annotations

Gene3D:1.10.287.80	Gene3D:3.40.1380.10	MapMan:35.1	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006139	GO:GO:0006754	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009772	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979	GO:GO:0015986	GO:GO:0016020
GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	GO:GO:0099132	EnsemblPlantsGene:GSMUA_Achr2G13970_001	EnsemblPlants:GSMUA_Achr2P13970_001
EnsemblPlants:GSMUA_Achr2T13970_001	UniProt:M0S7T8	PFAM:PF00231	PRINTS:PR00126	PANTHER:PTHR11693	PANTHER:PTHR11693:SF23
SUPFAM:SSF52943	UniParc:UPI00029657D0	:	:	:	:

Description

ATP synthase gamma chain 1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr2G13970_001]

Coordinates

chr2:+:15886136..15887041

Molecular Weight (calculated)

27310.2 Da

IEP (calculated)

9.610

GRAVY (calculated)

-0.023

Length

244 amino acids

Sequence
(BLAST)

001: MKLVAAAKVR RAQEAVVSGR PFSETLVEVL YNINEQLQTE DVDVPLTRVH PVRKIALVVV TADRGLCGGF NNNIIKKAEQ RIRELSALGI AYTVISVGKK
101: GNSYFQRRPN IPVDRFLEDV DKVELLYTKF VSLLFRLTTN ERKLTVERET VRTPTPAFSP ILQFEQDPVQ ILDALLPLYL NSQILRALQE SLASEFAARM
201: TAMINATDNA VELRRTLSIV YNRERQAKIT GGILEIVAGA DALS

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.