Factsheet for PGSC0003DMT400042499

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043112

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04640.1	PGSC0003DMT400043112	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080540.1.1	Tomato	plastid	98.41	98.41
KRH20854	Soybean	plastid	86.21	86.67
KRH11433	Soybean	nucleus, plastid	85.68	86.13
AT4G04640.1	Thale cress	plastid	81.96	82.84
GSMUA_Achr2P13970_001	Banana	mitochondrion	53.58	82.79
CDX94569	Canola	plastid	81.43	81.87
CDY16654	Canola	plastid	81.43	81.87
Bra029511.1-P	Field mustard	plastid	81.17	81.6
Bra000802.1-P	Field mustard	plastid	80.11	80.75
CDY21312	Canola	plastid	80.11	80.75
CDX90874	Canola	plastid	80.11	80.75
Zm00001d021620_P001	Maize	plastid	70.56	74.09
KXG36319	Sorghum	plastid	70.29	73.61
Zm00001d006475_P001	Maize	cytosol, mitochondrion	45.36	73.39
Os07t0513000-01	Rice	plastid	68.97	72.63
TraesCS2A01G223600.1	Wheat	plastid	67.37	70.95
TraesCS2B01G273900.1	Wheat	plastid	67.37	70.95
TraesCS2D01G229600.1	Wheat	plastid	67.37	70.75
PGSC0003DMT400071659	Potato	plastid	63.66	66.3
Bra018503.1-P	Field mustard	plastid	77.98	58.33
EES05204	Sorghum	plastid	18.04	31.92
PGSC0003DMT400063336	Potato	mitochondrion	23.08	26.85

Protein Annotations

MapMan:1.1.9.2.3	EntrezGene:102596547	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006139	GO:GO:0006754	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009772	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979	GO:GO:0015986	GO:GO:0016020
GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	GO:GO:0099132	UniProt:M1BD50	HAMAP:MF_00815
PFAM:PF00231	EnsemblPlantsGene:PGSC0003DMG400016482	PGSC:PGSC0003DMG400016482	EnsemblPlants:PGSC0003DMT400042499	PRINTS:PR00126	ScanProsite:PS00153
PANTHER:PTHR11693	PANTHER:PTHR11693:SF23	SUPFAM:SSF52943	TIGRFAMs:TIGR01146	UniParc:UPI000294F01C	RefSeq:XP_006348117.1
SEG:seg	:	:	:	:	:

Description

ATP synthase gamma chain, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400016482]

Coordinates

chr2:+:36344050..36345659

Molecular Weight (calculated)

41365.8 Da

IEP (calculated)

7.830

GRAVY (calculated)

-0.104

Length

377 amino acids

Sequence
(BLAST)

001: MSCSNLTMLV SSKPSLSDSS ALSFRSAVSS FQLPNHNSSG PSNPSRSSSV IPVQCGLRDL RDRIDSVKNT QKITEAMKLV AAAKVRRAQE AVVGARPFSE
101: TLVEVLYNIN EQLQTDDIDV PLTKVRPVKK VALVVVTGDR GLCGGFNNYI IKKAEARIRD LKALGIDYTI ISVGKKGNSY FLRRPYIPVD KFLEGSSLPT
201: AKDAQAIADD VFSLFVSEEV DKVELLYTKF VSLVKSEPVI HTLLPLSPKG EICDINGNCV DAAEDEFFRL TTKEGKLTVE RDVMRTKTTD FSAILQFEQD
301: PVQILDALLP LYLNSQILRA LQESLASELA SRMSAMSSAT DNASELKKNL SRVYNRQRQA KITGEILEIV AGADALV

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.