CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20443193
nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 20443193 doi

N Ahsan, Y Nanjo, H Sawada, Y Kohno, S Komatsu

National Institute of Crop Science, Tsukuba, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11500
KRH36517

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04640.1	KRH11500	AT4G22240.1	24937144
AT4G04640.1	KRH36517	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11433	Soybean	nucleus, plastid	97.33	97.33
PGSC0003DMT400042499	Potato	extracellular, plastid	86.67	86.21
Solyc02g080540.1.1	Tomato	plastid	86.13	85.68
GSMUA_Achr2P13970_001	Banana	mitochondrion	54.93	84.43
AT4G04640.1	Thale cress	plastid	81.87	82.31
CDY16654	Canola	plastid	80.8	80.8
CDX94569	Canola	plastid	80.53	80.53
Bra029511.1-P	Field mustard	plastid	80.0	80.0
Bra000802.1-P	Field mustard	plastid	79.2	79.41
CDX90874	Canola	plastid	79.2	79.41
CDY21312	Canola	plastid	79.2	79.41
KXG36319	Sorghum	plastid	72.53	75.56
Zm00001d006475_P001	Maize	cytosol, mitochondrion	46.93	75.54
Zm00001d021620_P001	Maize	plastid	72.0	75.21
Os07t0513000-01	Rice	plastid	70.67	74.02
TraesCS2A01G223600.1	Wheat	plastid	66.4	69.55
TraesCS2B01G273900.1	Wheat	plastid	66.4	69.55
TraesCS2D01G229600.1	Wheat	plastid	66.4	69.36
KRH46189	Soybean	plastid	58.4	64.04
Bra018503.1-P	Field mustard	plastid	76.53	56.94
EES05204	Sorghum	plastid	18.93	33.33
KRH54686	Soybean	mitochondrion	23.47	27.16
KRH63239	Soybean	mitochondrion	22.93	26.88

Protein Annotations

MapMan:1.1.9.2.3	EntrezGene:100797290	EMBL:ACUP02008320	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS
EnsemblPlantsGene:GLYMA_13G204800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046933
GO:GO:0099132	UniProt:I1M100	EnsemblPlants:KRH20854	ProteinID:KRH20854	ProteinID:KRH20854.1	ProteinID:KRH20855.1
HAMAP:MF_00815	PFAM:PF00231	PRINTS:PR00126	ScanProsite:PS00153	PANTHER:PTHR11693	PANTHER:PTHR11693:SF23
SUPFAM:SSF52943	TIGRFAMs:TIGR01146	UniParc:UPI000233BD9F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:-:31885462..31887911

Molecular Weight (calculated)

41372.1 Da

IEP (calculated)

7.742

GRAVY (calculated)

-0.075

Length

375 amino acids

Sequence
(BLAST)

001: MSCSNLTMLV SSKPSLSDPS NLSFRSVLNP FQLPTQNPAS CTPSRSSSTQ IQCGLRELRT RIESVKNTQK ITEAMKLVAA AKVRRAQEAV VNGRPFSETL
101: VEVLYNINEQ LQTEDVDIPL TKVRPVKKVA LVVITGDRGL CGGFNNAIIK KAEARIRELK ELGLQFTVIS VGKKGNSYFI RRPYIPVDKF LEGGTLPTAK
201: EAQAIADDVF SLFVSEEVDK VELLYTKFVS LVKSDPVIHT LLPLSPKGEI CDINGVCVDA AEDEFFRLTT KEGKLTVERD VVRTKTIDFS PILQFEQDPV
301: QILDALLPLY LNSQVLRALQ ESLASELAAR MSAMSNATDN AIELKKNLSI VYNRERQAKI TGEILEIVAG ANALQ

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.