CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0090g00480.t01	Wine grape	mitochondrion	57.89	64.29
Bra016652.1-P	Field mustard	plastid	65.2	58.84
CDX83971	Canola	plastid	65.2	58.84
KRH11433	Soybean	nucleus, plastid	64.33	58.67
CDX96834	Canola	plastid	64.91	58.58
KRH20854	Soybean	plastid	64.04	58.4
AT1G15700.1	Thale cress	plastid	64.33	56.99
PGSC0003DMT400071659	Potato	plastid	59.65	56.35
Solyc12g005060.1.1	Tomato	plastid	57.02	55.87
KRH63239	Soybean	mitochondrion	22.51	24.06
KRH54686	Soybean	mitochondrion	22.51	23.77
Os07t0513100-01	Rice	mitochondrion, nucleus	10.53	3.65

Protein Annotations

MapMan:1.1.9.2.3	Gene3D:1.10.287.80	EntrezGene:100797879	Gene3D:3.40.1380.10	EMBL:ACUP02005328	InterPro:ATP_synth_F1_ATPase_gsu
InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS	EnsemblPlantsGene:GLYMA_08G317100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006810
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009653	GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0045261
GO:GO:0046933	GO:GO:0099132	GO:GO:2000067	UniProt:I1KY89	EnsemblPlants:KRH46189	ProteinID:KRH46189
ProteinID:KRH46189.1	HAMAP:MF_00815	PFAM:PF00231	PRINTS:PR00126	ScanProsite:PS00153	PANTHER:PTHR11693
PANTHER:PTHR11693:SF23	SUPFAM:SSF52943	TIGRFAMs:TIGR01146	UniParc:UPI00023CA18F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:43674780..43676983

Molecular Weight (calculated)

37904.3 Da

IEP (calculated)

7.861

GRAVY (calculated)

-0.011

Length

342 amino acids

Sequence
(BLAST)

001: MFSLSKPILS PVRPTLPPVR CGSRELRERI KTVQTTQKIT EAMKLISAAR VRRAQEAVVS GRPFSSNLAA MLNDITQRLQ NDDVSTPLTH ARPVRTVALV
101: VVTADRGLCG GFNKSVIRKA LVRIEELEKL NLGCVVISVG KKGNSFFTHS INKKHPFVKV DSFIEIGGFP TAKEAQVIAD DVFSLFVSEE VDKVELVYAK
201: FVSLVRFEPV IQNLLPLGEV CDVKDEIFRL SSKEGKLAVE RDVVKLKKEG EMCFPLMEFE QDPVMILDAM LPLYLNSQVL RGLQESMASE LAARMVAMSN
301: ATDNAVDLSK RLSVEYNRER QAKITGELLE IVAGAEALAE ND

Best Arabidopsis Sequence Match ( AT1G15700.1 )
(BLAST)

001: MTGSISTSWL LSSPSNSNSA SSSESYSFIA TLKPVRYYPF QSLTPNRISS RSPLPSIQIR AGIRELRERI DSVKNTQKIT EAMRLVAAAR VRRAQDAVIK
101: GRPFTETLVE ILYSINQSAQ LEDIDFPLSI VRPVKRVALV VVTGDKGLCG GFNNAVTKKA TLRVQELKQR GIDCVVISVG KKGNAYFSRR DEFDVDKCIE
201: GGGVFPTTKE AQVIADDVFS LFVSEEVDKV ELVYTKFVSL VKSDPVIHTL LPLSMKGESC DVKGECVDAI EDEMFRLTSK DGKLAVERTK LEVEKPEISP
301: LMQFEQDPVQ ILDAMMPLYL NSQILRALQE SLASELASRM NAMSNATDNA VELKKNLTMA YNRARQAKIT GELLEIVAGA EALRES

Arabidopsis Description

ATPC2ATP synthase gamma chain 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01909]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.