CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63239	Soybean	mitochondrion	93.83	95.0
PGSC0003DMT400063336	Potato	mitochondrion	81.17	81.17
Solyc03g115110.2.1	Tomato	plastid	80.56	80.56
Bra021826.1-P	Field mustard	mitochondrion	79.63	80.37
CDY23771	Canola	mitochondrion	79.63	80.37
VIT_17s0000g07300.t01	Wine grape	mitochondrion	79.63	80.12
Bra005531.1-P	Field mustard	mitochondrion	80.25	80.0
CDX79484	Canola	mitochondrion	80.25	80.0
CDX84716	Canola	mitochondrion	80.25	80.0
CDY19433	Canola	mitochondrion	80.25	80.0
CDY17130	Canola	mitochondrion	79.94	79.69
AT2G33040.1	Thale cress	mitochondrion	79.94	79.69
Bra022908.1-P	Field mustard	mitochondrion	79.63	79.38
CDY37753	Canola	mitochondrion	62.96	79.38
GSMUA_Achr9P07120_001	Banana	mitochondrion	78.09	78.33
TraesCS1A01G138800.1	Wheat	golgi, unclear	78.4	77.91
TraesCS1B01G148500.1	Wheat	mitochondrion	78.4	77.91
Os10t0320400-01	Rice	mitochondrion	77.78	77.78
TraesCS1D01G132700.1	Wheat	golgi, unclear	78.09	77.61
EER95278	Sorghum	mitochondrion	78.4	76.97
HORVU7Hr1G085110.1	Barley	cytosol	35.19	55.07
CDX88259	Canola	nucleus	35.19	26.33
CDY72042	Canola	cytosol	33.02	25.06
KRH11433	Soybean	nucleus, plastid	27.16	23.47
KRH20854	Soybean	plastid	27.16	23.47
KRH46189	Soybean	plastid	23.77	22.51
Bra015765.1-P	Field mustard	nucleus	33.64	21.54
Zm00001d010316_P001	Maize	cytosol	3.7	16.0
Zm00001d044380_P001	Maize	cytosol	8.02	15.76

Protein Annotations

Gene3D:1.10.287.80	EntrezGene:100813657	MapMan:2.4.6.2.3	Gene3D:3.40.1380.10	EMBL:ACUP02003564	InterPro:ATP_synth_F1_ATPase_gsu
InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS	EnsemblPlantsGene:GLYMA_06G203200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006754	GO:GO:0006810
GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986
GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	GO:GO:0099132
UniProt:I1KD09	EnsemblPlants:KRH54686	ProteinID:KRH54686	ProteinID:KRH54686.1	PFAM:PF00231	PIRSF:PIRSF039089
PRINTS:PR00126	ScanProsite:PS00153	PANTHER:PTHR11693	PANTHER:PTHR11693:SF26	SUPFAM:SSF52943	TIGRFAMs:TIGR01146
UniParc:UPI0002339754	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:18993089..18999076

Molecular Weight (calculated)

35434.6 Da

IEP (calculated)

9.530

GRAVY (calculated)

-0.244

Length

324 amino acids

Sequence
(BLAST)

001: MAMAAALRRE GRRLTQPINA LHSSLNSSLI SQSVDQAPHG ARSISTQVVR NRMKSVRNIQ KITKAMKMVA ASKLRAVQTR TENSRGLWQP FTALLGDDPS
101: VDVKKNVVVT ISSDKGLCGG INSTSVKISR VLNKLNSGPD KETKYVILGE KAKAQLLRDS KKQIALSLTE LQKNPLNYTQ VSVLADDILK NVEYDALRIV
201: FNKFHSVVQF LPTVATVLSP EVIEREAESG GKLGELDSYE IEGGETKAEI LQNLAEFQFS CVMYNAVLEN ACSEQGARMS AMDSSSRNAG DMLDRLTLTY
301: NRTRQASITT ELIEIISGAS ALEG

Best Arabidopsis Sequence Match ( AT2G33040.1 )
(BLAST)

001: MAMAVFRREG RRLLPSIAAR PIAAIRSPLS SDQEEGLLGV RSISTQVVRN RMKSVKNIQK ITKAMKMVAA SKLRAVQGRA ENSRGLWQPF TALLGDNPSI
101: DVKKSVVVTL SSDKGLCGGI NSTVVKVSRA LYKLNAGPEK EVQFVIVGEK AKAIMFRDSK NDIVLSVTEL NKNPLNYAQV SVLADDILKN VEFDALRIVY
201: NKFHSVVAFL PTVSTVLSPE IIEKESEIGG KLGELDSYEI EGGETKGEIL QNLAEFQFSC VMFNAVLENA CSEMGARMSA MDSSSRNAGE MLDRLTLTYN
301: RTRQASITTE LIEIISGASA LEAAK

Arabidopsis Description

ATPCATP synthase subunit gamma, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96250]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.