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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY72042 Canola cytosol 61.66 62.53
Bra015765.1-P Field mustard nucleus 53.35 45.65
HORVU7Hr1G085110.1 Barley cytosol 18.48 38.65
CDY23771 Canola mitochondrion 28.64 38.63
CDX79484 Canola mitochondrion 28.87 38.46
CDX84716 Canola mitochondrion 28.87 38.46
CDY17130 Canola mitochondrion 28.87 38.46
CDY19433 Canola mitochondrion 28.87 38.46
KRH54686 Soybean mitochondrion 26.33 35.19
VIT_17s0000g07300.t01 Wine grape mitochondrion 26.1 35.09
KRH63239 Soybean mitochondrion 25.87 35.0
CDX88260 Canola nucleus 12.24 34.42
Os10t0320400-01 Rice mitochondrion 25.64 34.26
CDY37753 Canola mitochondrion 19.86 33.46
TraesCS1D01G132700.1 Wheat golgi, unclear 25.17 33.44
TraesCS1B01G148500.1 Wheat mitochondrion 25.17 33.44
TraesCS1A01G138800.1 Wheat golgi, unclear 25.17 33.44
GSMUA_Achr9P07120_001 Banana mitochondrion 24.71 33.13
EER95278 Sorghum mitochondrion 24.94 32.73
PGSC0003DMT400063336 Potato mitochondrion 24.48 32.72
Solyc03g115110.2.1 Tomato plastid 23.79 31.79
CDY16654 Canola plastid 13.16 15.2
CDX94569 Canola plastid 13.16 15.2
CDX96834 Canola plastid 12.93 14.78
CDX83971 Canola plastid 12.47 14.25
CDY21312 Canola plastid 12.24 14.17
CDX90874 Canola plastid 12.24 14.17
Zm00001d044380_P001 Maize cytosol 3.93 10.3
CDY33548 Canola cytosol, mitochondrion 2.77 9.52
CDX97316 Canola plastid 7.39 6.74
Zm00001d010316_P001 Maize cytosol 0.92 5.33
Protein Annotations
Gene3D:3.40.1380.10Gene3D:3.90.70.10MapMan:35.1GO:A0A078DIC3InterPro:ATP_synth_F1_ATPase_gsuInterPro:ATP_synth_F1_gsu
EnsemblPlants:CDX88259ProteinID:CDX88259ProteinID:CDX88259.1GO:GO:0003674GO:GO:0003824GO:GO:0005215
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006139GO:GO:0006810GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0015986GO:GO:0016020GO:GO:0016787
GO:GO:0045261GO:GO:0046933EnsemblPlantsGene:GSBRNA2T00147750001PFAM:PF00231PRINTS:PR00126PANTHER:PTHR11693
PANTHER:PTHR11693:SF26InterPro:Papain_like_cys_pep_sfSUPFAM:SSF52943SUPFAM:SSF54001UniParc:UPI0004EF10DCSEG:seg
Description
BnaC06g37030D
Coordinates
chrLK031855:+:38292..40531
Molecular Weight (calculated)
48252.8 Da
IEP (calculated)
7.863
GRAVY (calculated)
-0.323
Length
433 amino acids
Sequence
(BLAST)
001: MSDRVTYRDM GIMEEVLNQR QKQVCWAISL TRQLAALLKL RGQLNINASL SIQYLINKVG SSLFGAQMSR PWNGSVRSLE TAIPFLVNGT VLENLVPLRQ
101: FDLQSSTPEN HVLGERRYRA VRIVVHRIDE YRVAFEADLL RCLHQSPVAA VIKLYPSYGR ITGNQIYRQR TSERDEATPL KHSMLGGYVK IRKGVGLISE
201: FVEMFLVEEE PRKKKRKAVS VDASHKRPKK VYKRLSLGPG KQSKSHKLSQ GLWNSTSTSR EAGSFVRPIS PKSPVPSASA FENMGESDDD IPELDASYFQ
301: TNGYLPADAT EEQISMAAAS MIRSHSLSEF DALCIVYNKF HSVLSPKIIE KESEVGGKLG ELDSCEIEAG ETKGEILQNL AEFQFSCVMF NAVLENACSE
401: MGAGMSAMDS SSRNAGEMLD HLTLAYNREL EAA
Best Arabidopsis Sequence Match ( AT2G38280.1 )
(BLAST)
001: MEPNIYQLAL AALFGASFVA VSGFFMHFKA LNLVLERGKE RKENPDGDEP QNPTLVRRRS QVRRKVNDQY GRSPASLPDA TPFTDGGGGG GGDTGRSNGH
101: VYVDEIPPGL PRLHTPSEGR ASVHGASSIR KTGSFVRPIS PKSPVASASA FESVEESDDD DNLTNSEGLD ASYLQANGDN EMPADANEEQ ISMAASSMIR
201: SHSVSGDLHG VQPDPIAADI LRKEPEQETF VRLNVPLEVP TSDEVEAYKC LQECLELRKR YVFQETVAPW EKEVISDPST PKPNTEPFAH YPQGKSDHCF
301: EMQDGVVHVF ANKDAKEDLF PVADATAFFT DLHHVLKVIA AGNIRTLCHR RLVLLEQKFN LHLMLNADKE FLAQKSAPHR DFYNVRKVDT HVHHSACMNQ
401: KHLLRFIKSK LRKEPDEVVI FRDGTYLTLR EVFESLDLTG YDLNVDLLDV HADKSTFHRF DKFNLKYNPC GQSRLREIFL KQDNLIQGRF LGEITKQVFS
501: DLEASKYQMA EYRISIYGRK MSEWDQLASW IVNNDLYSEN VVWLIQLPRL YNIYKDMGIV TSFQNILDNI FIPLFEATVD PDSHPQLHVF LKQVVGFDLV
601: DDESKPERRP TKHMPTPAQW TNAFNPAFSY YVYYCYANLY VLNKLRESKG MTTITLRPHS GEAGDIDHLA ATFLTCHSIA HGINLRKSPV LQYLYYLAQI
701: GLAMSPLSNN SLFLDYHRNP FPVFFLRGLN VSLSTDDPLQ IHLTKEPLVE EYSIAASVWK LSACDLCEIA RNSVYQSGFS HALKSHWIGK DYYKRGPDGN
801: DIHKTNVPHI RVEFRDTIWK EEMQQVYLGK AVISDEVVP
Arabidopsis Description
AMPDFAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VY66]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.