CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54686	Soybean	mitochondrion	95.0	93.83
Solyc03g115110.2.1	Tomato	plastid	82.5	81.48
PGSC0003DMT400063336	Potato	mitochondrion	82.5	81.48
CDY23771	Canola	mitochondrion	80.62	80.37
AT2G33040.1	Thale cress	mitochondrion	81.56	80.31
Bra021826.1-P	Field mustard	mitochondrion	80.31	80.06
VIT_17s0000g07300.t01	Wine grape	mitochondrion	80.31	79.81
CDX79484	Canola	mitochondrion	80.94	79.69
CDX84716	Canola	mitochondrion	80.94	79.69
CDY19433	Canola	mitochondrion	80.62	79.38
CDY37753	Canola	mitochondrion	63.75	79.38
Bra005531.1-P	Field mustard	mitochondrion	80.31	79.08
Bra022908.1-P	Field mustard	mitochondrion	80.31	79.08
CDY17130	Canola	mitochondrion	80.31	79.08
GSMUA_Achr9P07120_001	Banana	mitochondrion	78.12	77.4
TraesCS1A01G138800.1	Wheat	golgi, unclear	78.44	76.99
TraesCS1B01G148500.1	Wheat	mitochondrion	78.44	76.99
TraesCS1D01G132700.1	Wheat	golgi, unclear	78.12	76.69
Os10t0320400-01	Rice	mitochondrion	77.19	76.23
EER95278	Sorghum	mitochondrion	77.81	75.45
HORVU7Hr1G085110.1	Barley	cytosol	35.31	54.59
CDX88259	Canola	nucleus	35.0	25.87
CDY72042	Canola	cytosol	33.12	24.82
KRH11433	Soybean	nucleus, plastid	26.88	22.93
KRH20854	Soybean	plastid	26.88	22.93
KRH46189	Soybean	plastid	24.06	22.51
Bra015765.1-P	Field mustard	nucleus	33.75	21.34
Zm00001d044380_P001	Maize	cytosol	7.81	15.15
Zm00001d010316_P001	Maize	cytosol	3.44	14.67

Protein Annotations

Gene3D:1.10.287.80	EntrezGene:100790402	MapMan:2.4.6.2.3	Gene3D:3.40.1380.10	EMBL:ACUP02002649	InterPro:ATP_synth_F1_ATPase_gsu
InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS	EMBL:BT093819	UniProt:C6T8L7	EnsemblPlantsGene:GLYMA_04G162800	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986
GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	GO:GO:0099132	EnsemblPlants:KRH63239
ProteinID:KRH63239	ProteinID:KRH63239.1	HAMAP:MF_00815	PFAM:PF00231	PIRSF:PIRSF039089	PRINTS:PR00126
ScanProsite:PS00153	PANTHER:PTHR11693	PANTHER:PTHR11693:SF26	SUPFAM:SSF52943	TIGRFAMs:TIGR01146	UniParc:UPI0001B16175

Description

hypothetical protein

Coordinates

chr4:-:40387251..40393269

Molecular Weight (calculated)

35199.4 Da

IEP (calculated)

9.801

GRAVY (calculated)

-0.238

Length

320 amino acids

Sequence
(BLAST)

001: MAMAAALRRE GRRLTQPINA LRSSLISQSV DQSPHGARFI STQVVRNRMK SVRNIQKITK AMKMVAASKL RAVQTRAENS RGLWQPFTAL LGDNPSADVK
101: KNVVVTISSD KGLCGGINST SVKISRVLYK LNSGPDKETK YVILGEKAKA QLLRDSRKHI VLSLTELQKN PLNYTQVSVL ADDILKNVEY DALRIVFNKF
201: HSVVQFLPTV STVLSPEVIE REAESGGKLG ELDSYEIEGG ETKAEILQNL AEFQFSCVMY NAVLENACSE QGARMSAMDS SSRNAGDMLD RLTLTYNRTR
301: QASITTELIE IISGASALEG

Best Arabidopsis Sequence Match ( AT2G33040.1 )
(BLAST)

001: MAMAVFRREG RRLLPSIAAR PIAAIRSPLS SDQEEGLLGV RSISTQVVRN RMKSVKNIQK ITKAMKMVAA SKLRAVQGRA ENSRGLWQPF TALLGDNPSI
101: DVKKSVVVTL SSDKGLCGGI NSTVVKVSRA LYKLNAGPEK EVQFVIVGEK AKAIMFRDSK NDIVLSVTEL NKNPLNYAQV SVLADDILKN VEFDALRIVY
201: NKFHSVVAFL PTVSTVLSPE IIEKESEIGG KLGELDSYEI EGGETKGEIL QNLAEFQFSC VMFNAVLENA CSEMGARMSA MDSSSRNAGE MLDRLTLTYN
301: RTRQASITTE LIEIISGASA LEAAK

Arabidopsis Description

ATPCATP synthase subunit gamma, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96250]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.