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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH11500
KRH36517

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH20854 Soybean plastid 97.33 97.33
PGSC0003DMT400042499 Potato extracellular, plastid 86.13 85.68
Solyc02g080540.1.1 Tomato plastid 85.6 85.15
GSMUA_Achr2P13970_001 Banana mitochondrion 55.2 84.84
AT4G04640.1 Thale cress plastid 81.87 82.31
CDY16654 Canola plastid 80.53 80.53
CDX94569 Canola plastid 80.27 80.27
Bra029511.1-P Field mustard plastid 79.73 79.73
Bra000802.1-P Field mustard plastid 79.2 79.41
CDX90874 Canola plastid 79.2 79.41
CDY21312 Canola plastid 79.2 79.41
Zm00001d006475_P001 Maize cytosol, mitochondrion 47.47 76.39
Zm00001d021620_P001 Maize plastid 72.27 75.49
KXG36319 Sorghum plastid 72.27 75.28
Os07t0513000-01 Rice plastid 71.2 74.58
TraesCS2A01G223600.1 Wheat plastid 66.93 70.11
TraesCS2B01G273900.1 Wheat plastid 66.93 70.11
TraesCS2D01G229600.1 Wheat plastid 66.93 69.92
KRH46189 Soybean plastid 58.67 64.33
Bra018503.1-P Field mustard plastid 76.27 56.75
EES05204 Sorghum plastid 19.2 33.8
KRH54686 Soybean mitochondrion 23.47 27.16
KRH63239 Soybean mitochondrion 22.93 26.88
Protein Annotations
MapMan:1.1.9.2.3EMBL:ACUP02009209InterPro:ATP_synth_F1_ATPase_gsuInterPro:ATP_synth_F1_gsuInterPro:ATP_synth_F1_gsu_CSEnsemblPlantsGene:GLYMA_15G107900
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0006139GO:GO:0006810GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0015986GO:GO:0016020GO:GO:0016787GO:GO:0045261GO:GO:0046933GO:GO:0099132
UniProt:I1MFH3ProteinID:KRH11432.1EnsemblPlants:KRH11433ProteinID:KRH11433ProteinID:KRH11433.1HAMAP:MF_00815
PFAM:PF00231PRINTS:PR00126ScanProsite:PS00153PANTHER:PTHR11693PANTHER:PTHR11693:SF23SUPFAM:SSF52943
TIGRFAMs:TIGR01146UniParc:UPI00023D26E2SEG:seg:::
Description
hypothetical protein
Coordinates
chr15:+:8484079..8485970
Molecular Weight (calculated)
41332.0 Da
IEP (calculated)
7.071
GRAVY (calculated)
-0.073
Length
375 amino acids
Sequence
(BLAST)
001: MSCSNLTMLV SSKPSLSDPS NLSFRSVLNP FQLPSQNPTS CTPSRSSTTQ IQCGLRELRT RIDSVKNTQK ITEAMKLVAA AKVRRAQEAV VNGRPFSETL
101: VEVLYNINEQ LLTEDVDIPL TKVRPVKKVA LVVVTGDRGL CGGFNNAIIK KAEARIRELK ELGLEFTVIS VGKKGNSYFI RRPYIPVDRF LEGGTLPTAK
201: EAQAIADDVF SLFVSEEVDK VELLYTKFVS LVKSDPVIHT LLPLSPKGEI CDVNGVCVDA AEDEFFRLTT KEGKLTVERD VVRTKTADFS PILQFEQDPV
301: QILDALLPLY LNSQVLRALQ ESLASELAAR MSAMSNATDN AIELKKNLSI VYNRERQAKI TGEILEIVAG ANALQ
Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)
001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV
Arabidopsis Description
ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.