Factsheet for TraesCS2D01G229600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 18071923
plastid: 19643044
plastid: 22160430
plastid: 22736107

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 19643044 doi

DY Hou, H Xu, GY Du, JT Lin, M Duan, AG Guo

College of Life Science, Northwest A&F University, Yangling, Shaanxi 712100, P. R. China.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G164600.1
TraesCS5B01G162100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04640.1	TraesCS5A01G164600.1	AT4G22240.1	24937144
AT4G04640.1	TraesCS5B01G162100.1	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G273900.1	Wheat	plastid	99.72	100.0
TraesCS2A01G223600.1	Wheat	plastid	99.72	100.0
Os07t0513000-01	Rice	plastid	86.07	86.31
Zm00001d021620_P001	Maize	plastid	86.07	86.07
Zm00001d006475_P001	Maize	cytosol, mitochondrion	55.71	85.84
KXG36319	Sorghum	plastid	85.52	85.28
GSMUA_Achr2P13970_001	Banana	mitochondrion	50.14	73.77
Solyc02g080540.1.1	Tomato	plastid	70.75	67.37
PGSC0003DMT400042499	Potato	extracellular, plastid	70.75	67.37
Bra029511.1-P	Field mustard	plastid	70.19	67.2
KRH11433	Soybean	nucleus, plastid	69.92	66.93
CDY16654	Canola	plastid	69.92	66.93
CDY21312	Canola	plastid	69.64	66.84
CDX90874	Canola	plastid	69.64	66.84
Bra000802.1-P	Field mustard	plastid	69.64	66.84
CDX94569	Canola	plastid	69.64	66.67
AT4G04640.1	Thale cress	plastid	69.08	66.49
KRH20854	Soybean	plastid	69.36	66.4
Bra018503.1-P	Field mustard	plastid	66.85	47.62
EES05204	Sorghum	plastid	22.01	37.09
TraesCS1D01G132700.1	Wheat	golgi, unclear	25.07	27.61

Protein Annotations

MapMan:1.1.9.2.3	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006139	GO:GO:0006754	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009772
GO:GO:0009941	GO:GO:0009987	GO:GO:0015979	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787
GO:GO:0045261	GO:GO:0046933	HAMAP:MF_00815	PFAM:PF00231	PRINTS:PR00126	ScanProsite:PS00153
PANTHER:PTHR11693	PANTHER:PTHR11693:SF23	SUPFAM:SSF52943	TIGRFAMs:TIGR01146	EnsemblPlantsGene:TraesCS2D01G229600	EnsemblPlants:TraesCS2D01G229600.1
TIGR:cd12151	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:199356342..199357421

Molecular Weight (calculated)

39841.1 Da

IEP (calculated)

8.089

GRAVY (calculated)

-0.116

Length

359 amino acids

Sequence
(BLAST)

001: MSCSHLSTAW SSSALASTST RRRASTGSSS SLVVRCSLRD LRNRIDSVRN TQKITEAMKL VAAAKVRRAQ EAVVSSRPFS EALVEVLYNM NQEIQSEDID
101: LPLTRQRAVK RVAIVVLTGE RGLCGAFNNN VLKKAEARME DLRQLGVDYT VISVGKKGNA YFQRRDYIPT ERFLELAGIP TVKDSQAICD LIYSLFVAEE
201: VDKVELVYSK FVNLVRSDPI IQTLLPMSPK GEICDVNGIC VDATEDELFK LTTKEGKLTV EREKIKIEMQ PFSPVVQFEQ DPVQILDALL PLYLNSQILR
301: ALQESLASEL AARMSAMSSA TDNAIDLRKN LSMVYNRRRQ AKITGEILEI VAGADALSG

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.