Factsheet for Bra029511.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013602.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04640.1	Bra013602.1-P	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16654	Canola	plastid	97.33	97.33
CDX94569	Canola	plastid	96.53	96.53
Bra000802.1-P	Field mustard	plastid	91.73	91.98
AT4G04640.1	Thale cress	plastid	91.47	91.96
GSMUA_Achr2P13970_001	Banana	mitochondrion	53.6	82.38
PGSC0003DMT400042499	Potato	extracellular, plastid	81.6	81.17
Solyc02g080540.1.1	Tomato	plastid	81.33	80.9
KRH20854	Soybean	plastid	80.0	80.0
KRH11433	Soybean	nucleus, plastid	79.73	79.73
Zm00001d006475_P001	Maize	cytosol, mitochondrion	45.87	73.82
KXG36319	Sorghum	plastid	69.87	72.78
Os07t0513000-01	Rice	plastid	69.33	72.63
Zm00001d021620_P001	Maize	plastid	69.33	72.42
TraesCS2D01G229600.1	Wheat	plastid	67.2	70.19
TraesCS2A01G223600.1	Wheat	plastid	66.93	70.11
TraesCS2B01G273900.1	Wheat	plastid	66.93	70.11
Bra018503.1-P	Field mustard	plastid	86.93	64.68
Bra016652.1-P	Field mustard	plastid	64.0	63.32
EES05204	Sorghum	plastid	18.67	32.86
Bra021826.1-P	Field mustard	mitochondrion	25.6	29.91
Bra005531.1-P	Field mustard	mitochondrion	25.6	29.54
Bra022908.1-P	Field mustard	mitochondrion	25.6	29.54
Bra015765.1-P	Field mustard	nucleus	13.87	10.28

Protein Annotations

MapMan:1.1.9.2.3	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS	EnsemblPlantsGene:Bra029511	EnsemblPlants:Bra029511.1
EnsemblPlants:Bra029511.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046933
GO:GO:0099132	UniProt:M4EL44	HAMAP:MF_00815	PFAM:PF00231	PRINTS:PR00126	ScanProsite:PS00153
PANTHER:PTHR11693	PANTHER:PTHR11693:SF23	SUPFAM:SSF52943	TIGRFAMs:TIGR01146	UniParc:UPI0002542696	SEG:seg

Description

AT4G04640 (E=2e-165) ATPC1 | ATPC1; enzyme regulator

Coordinates

chrA09:+:17452919..17454046

Molecular Weight (calculated)

41134.5 Da

IEP (calculated)

6.563

GRAVY (calculated)

-0.105

Length

375 amino acids

Sequence
(BLAST)

001: MACTNLTTMW GVSSNPSLSD SSSLSFRSVL SPLPLPNHNI SPSRSSSVAP IQSSLRELRD RIDSVKNTQK ITEAMKLVAA AKVRRAQEAV VNGRPFSETL
101: VEVLYNINEQ LQTDDIDVPL TKIRPVKKVA LVVVTGDRGL CGGFNNFIIK KAEARIKELQ GLGLDYTVIS VGKKGNSYFL RRPYIPVDKY LEAGTLPTAK
201: EAQAVADDVF SLFISEEVDK VELLYTKFVS LVKSEPVIHT LLPLSPKGEI CDINGNCVDA AEDELFRLTT KEGKLTVERE TFRTPTADFS PILQFEQDPV
301: QILDALLPLY LNSQILRALQ ESLASELAAR MSAMSSASDN ASDLKKSLSM VYNRKRQAKI TGEILEIVAG ANAQA

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.