Factsheet for Zm00001d021620_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 20701693
plastid: 21196305
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
cytosol: 28250383

msms PMID: 20701693 doi

A Campos, PK Carvajal-Vallejos, E Villalobos, CF Franco, AM Almeida, AV Coelho, JM Torné, M Santos

Instituto de Tecnologia Química e Biológica (ITQB), Universidade Nova de Lisboa, Oeiras, Portugal.

msms PMID: 28250383 doi

CN Meisrimler, F Buck, S Lüthje

University Hospital Eppendorf, Institute of Clinical Chemistry, Campus Science, Martinistraße 52, D-20246 Hamburg, Germany. buck@uke.de., University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Oxidative Stress and Plant Proteomics Group, Ohnhorststraße 18, D-22609 Hamburg, Germany. c_m_2406@yahoo.de., University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Oxidative Stress and Plant Proteomics Group, Ohnhorststraße 18, D-22609 Hamburg, Germany. s.luthje@botanik.uni-hamburg.de.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 21196305

XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang

Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003470_P001
Zm00001d025574_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04640.1	Zm00001d003470_P001	AT4G22240.1	24937144
AT4G04640.1	Zm00001d025574_P001	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36319	Sorghum	plastid	95.82	95.56
Zm00001d006475_P001	Maize	cytosol, mitochondrion	60.17	92.7
Os07t0513000-01	Rice	plastid	91.92	92.18
TraesCS2B01G273900.1	Wheat	plastid	86.07	86.31
TraesCS2A01G223600.1	Wheat	plastid	86.07	86.31
TraesCS2D01G229600.1	Wheat	plastid	86.07	86.07
GSMUA_Achr2P13970_001	Banana	mitochondrion	52.92	77.87
KRH11433	Soybean	nucleus, plastid	75.49	72.27
KRH20854	Soybean	plastid	75.21	72.0
Solyc02g080540.1.1	Tomato	plastid	74.09	70.56
PGSC0003DMT400042499	Potato	extracellular, plastid	74.09	70.56
Bra000802.1-P	Field mustard	plastid	72.7	69.79
CDY21312	Canola	plastid	72.7	69.79
CDX90874	Canola	plastid	72.7	69.79
CDY16654	Canola	plastid	72.7	69.6
AT4G04640.1	Thale cress	plastid	72.14	69.44
Bra029511.1-P	Field mustard	plastid	72.42	69.33
CDX94569	Canola	plastid	71.87	68.8
Bra018503.1-P	Field mustard	plastid	69.08	49.21
Zm00001d048091_P002	Maize	mitochondrion	23.96	26.06
Zm00001d028207_P001	Maize	cytosol, mitochondrion, plastid	22.84	21.47
Zm00001d010316_P001	Maize	cytosol	3.9	18.67
Zm00001d044380_P001	Maize	cytosol	8.36	18.18

Protein Annotations

MapMan:1.1.9.2.3	EntrezGene:100284505	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS	EMBL:AY108268
UniProt:B6TUD4	EMBL:BT060551	EMBL:EU968599	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006754
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015986	GO:GO:0015992
GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	GO:GO:0099132	HAMAP:MF_00815
ProteinID:ONM57681.1	UniProt:P0C1M0	PFAM:PF00231	PRINTS:PR00126	ScanProsite:PS00153	PANTHER:PTHR11693
PANTHER:PTHR11693:SF23	SUPFAM:SSF52943	TIGRFAMs:TIGR01146	UniParc:UPI0000DA5A1C	EnsemblPlantsGene:Zm00001d021620	EnsemblPlants:Zm00001d021620_P001
EnsemblPlants:Zm00001d021620_T001	SEG:seg	:	:	:	:

Description

ATP synthase chloroplast subunit2 ATP synthase chloroplast subunit2

Coordinates

chr7:-:158179238..158180317

Molecular Weight (calculated)

39792.1 Da

IEP (calculated)

8.340

GRAVY (calculated)

-0.143

Length

359 amino acids

Sequence
(BLAST)

001: MSCSHLSTAW SSSALASSAS TTRRRSPPRS GLLVRCSLRE LRTRIDSVRN TQKITEAMKL VAAAKVRRAQ EAVVSSRPFS EALVEVLYNM NQEIQTEDID
101: LPLTRTRPVK KVALVVLTGE RGLCGSFNNN VLKKAETRID ELKQLGLQYT VVSVGKKGNA YFQRRPYIPL ERDLEVSSVP TVKDSQAICD LVYSLFVSEE
201: VDKVELLYSK FVSLVRSDPI IQTLLPMSPK GEICDVNGVC VDATEDELFR LTTKEGKLTV EREKVKIETQ PFSPVVQFEQ DPVQILDALL PLYLNSQILR
301: ALQESLASEL AARMSAMSSA TDNAIELRKN LSIAYNRQRQ AKITGEILEI VAGADALAG

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.