Factsheet for Zm00001d044380_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010316_P001	Maize	cytosol	41.82	92.0
VIT_17s0000g07300.t01	Wine grape	mitochondrion	18.79	9.63
Bra005531.1-P	Field mustard	mitochondrion	17.58	8.92
PGSC0003DMT400063336	Potato	mitochondrion	16.97	8.64
Bra022908.1-P	Field mustard	mitochondrion	16.97	8.62
CDY17130	Canola	mitochondrion	16.97	8.62
CDY19433	Canola	mitochondrion	16.97	8.62
Zm00001d021620_P001	Maize	plastid	18.18	8.36
Solyc03g115110.2.1	Tomato	plastid	16.36	8.33
CDX79484	Canola	mitochondrion	16.36	8.31
CDX84716	Canola	mitochondrion	16.36	8.31
KRH54686	Soybean	mitochondrion	15.76	8.02
AT2G33040.1	Thale cress	mitochondrion	15.76	8.0
Zm00001d048091_P002	Maize	mitochondrion	15.76	7.88
KRH63239	Soybean	mitochondrion	15.15	7.81
CDY23771	Canola	mitochondrion	15.15	7.79
Bra021826.1-P	Field mustard	mitochondrion	15.15	7.79
Zm00001d006475_P001	Maize	cytosol, mitochondrion	10.91	7.73
CDY37753	Canola	mitochondrion	11.52	7.39
Zm00001d028207_P001	Maize	cytosol, mitochondrion, plastid	13.94	6.02
HORVU7Hr1G085110.1	Barley	cytosol	5.45	4.35
CDY72042	Canola	cytosol	10.91	4.22
CDX88259	Canola	nucleus	10.3	3.93
Bra015765.1-P	Field mustard	nucleus	7.88	2.57

Protein Annotations

Gene3D:1.10.287.80	MapMan:35.2	UniProt:A0A1D6NLB4	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986
GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	GO:GO:0099132	ProteinID:ONM41015.1
PFAM:PF00231	PANTHER:PTHR11693	PANTHER:PTHR11693:SF23	SUPFAM:SSF52943	UniParc:UPI000844509A	EnsemblPlantsGene:Zm00001d044380
EnsemblPlants:Zm00001d044380_P001	EnsemblPlants:Zm00001d044380_T001	SEG:seg	:	:	:

Description

ATP synthase gamma chain 1 chloroplastic

Coordinates

chr3:-:226483219..226483716

Molecular Weight (calculated)

18333.0 Da

IEP (calculated)

11.905

GRAVY (calculated)

-0.531

Length

165 amino acids

Sequence
(BLAST)

001: MQPFSPVVQF EQDPVQILDA LLLLYLNSQL LRALQESLAS ELAARMSAMS SATDNAIELR KNLSRRSILL LGRSRRHGYR CSVSWRRVWR VGENGSGCGD
101: DYRGEGGGHR EQGGRSGRAS SVEAKAVAGG RRGRGRRGEW KRTSIAVGIP LSMLDSGPIL WRRRR

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.