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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • mitochondrion 10
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion
BaCelLo:mitochondrion
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400063336 Potato mitochondrion 92.28 92.28
KRH63239 Soybean mitochondrion 81.48 82.5
VIT_17s0000g07300.t01 Wine grape mitochondrion 81.79 82.3
KRH54686 Soybean mitochondrion 80.56 80.56
CDY23771 Canola mitochondrion 76.23 76.95
Bra021826.1-P Field mustard mitochondrion 75.93 76.64
GSMUA_Achr9P07120_001 Banana mitochondrion 75.93 76.16
AT2G33040.1 Thale cress mitochondrion 76.23 76.0
CDX79484 Canola mitochondrion 75.93 75.69
CDX84716 Canola mitochondrion 75.93 75.69
CDY19433 Canola mitochondrion 75.62 75.38
Bra005531.1-P Field mustard mitochondrion 75.31 75.08
CDY17130 Canola mitochondrion 75.31 75.08
Bra022908.1-P Field mustard mitochondrion 75.31 75.08
TraesCS1A01G138800.1 Wheat golgi, unclear 75.0 74.54
CDY37753 Canola mitochondrion 58.95 74.32
TraesCS1B01G148500.1 Wheat mitochondrion 74.69 74.23
TraesCS1D01G132700.1 Wheat golgi, unclear 74.69 74.23
Os10t0320400-01 Rice mitochondrion 74.07 74.07
EER95278 Sorghum mitochondrion 74.38 73.03
HORVU7Hr1G085110.1 Barley cytosol 32.72 51.21
CDX88259 Canola nucleus 31.79 23.79
Solyc02g080540.1.1 Tomato plastid 27.16 23.34
CDY72042 Canola cytosol 30.25 22.95
Solyc12g005060.1.1 Tomato plastid 24.38 22.64
Bra015765.1-P Field mustard nucleus 31.48 20.16
Zm00001d010316_P001 Maize cytosol 4.32 18.67
Zm00001d044380_P001 Maize cytosol 8.33 16.36
Protein Annotations
Gene3D:1.10.287.80MapMan:2.4.6.2.3Gene3D:3.40.1380.10InterPro:ATP_synth_F1_ATPase_gsuInterPro:ATP_synth_F1_gsuInterPro:ATP_synth_F1_gsu_CS
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0006139GO:GO:0006810GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0015986GO:GO:0016020GO:GO:0016787GO:GO:0045261GO:GO:0046933GO:GO:0099132
UniProt:K4BL13HAMAP:MF_00815PFAM:PF00231PIRSF:PIRSF039089PRINTS:PR00126ScanProsite:PS00153
PANTHER:PTHR11693PANTHER:PTHR11693:SF26SUPFAM:SSF52943EnsemblPlantsGene:Solyc03g115110.2EnsemblPlants:Solyc03g115110.2.1TIGRFAMs:TIGR01146
UniParc:UPI0002768787:::::
Description
No Description!
Coordinates
chr3:-:64915129..64919553
Molecular Weight (calculated)
35575.0 Da
IEP (calculated)
9.316
GRAVY (calculated)
-0.204
Length
324 amino acids
Sequence
(BLAST)
001: MAMAALRREG RRFATPLISP NPATVFRSSI IPSEEPVLSG VRCISTQVVR NRMKSVKNIQ KITKAMKMVA ASKLRAIQTR AENSRGLWQP FTALLGDTPS
101: IDVKKNVIVT ISADKGLCGG INSTSVKISR AMHKLNSGPD KENKYVVLGE KAKAQLVRDS KKDIELVMTE LQKNPLNYTQ VSVMADDILK NVEFDALRIV
201: YNKFQSVVSF LPTVSTVLSP EVVEREAESG GKLGDLDLYE IEGAETKGEV LQNLTEFQFS CMMYNAVLEN ATSEQGARMS AMDSSSRNAG DMLDRLTLTY
301: NRTRQASITT ELIEIISGAS ALEG
Best Arabidopsis Sequence Match ( AT2G33040.1 )
(BLAST)
001: MAMAVFRREG RRLLPSIAAR PIAAIRSPLS SDQEEGLLGV RSISTQVVRN RMKSVKNIQK ITKAMKMVAA SKLRAVQGRA ENSRGLWQPF TALLGDNPSI
101: DVKKSVVVTL SSDKGLCGGI NSTVVKVSRA LYKLNAGPEK EVQFVIVGEK AKAIMFRDSK NDIVLSVTEL NKNPLNYAQV SVLADDILKN VEFDALRIVY
201: NKFHSVVAFL PTVSTVLSPE IIEKESEIGG KLGELDSYEI EGGETKGEIL QNLAEFQFSC VMFNAVLENA CSEMGARMSA MDSSSRNAGE MLDRLTLTYN
301: RTRQASITTE LIEIISGASA LEAAK
Arabidopsis Description
ATPCATP synthase subunit gamma, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96250]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.