CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84716	Canola	mitochondrion	100.0	100.0
Bra022908.1-P	Field mustard	mitochondrion	99.38	99.38
CDY19433	Canola	mitochondrion	98.46	98.46
CDY17130	Canola	mitochondrion	98.46	98.46
AT2G33040.1	Thale cress	mitochondrion	97.54	97.54
CDY23771	Canola	mitochondrion	95.69	96.88
CDY37753	Canola	mitochondrion	73.54	93.0
KRH63239	Soybean	mitochondrion	79.69	80.94
KRH54686	Soybean	mitochondrion	80.0	80.25
GSMUA_Achr9P07120_001	Banana	mitochondrion	77.54	78.02
PGSC0003DMT400063336	Potato	mitochondrion	76.31	76.54
Solyc03g115110.2.1	Tomato	plastid	75.69	75.93
VIT_17s0000g07300.t01	Wine grape	mitochondrion	75.08	75.78
TraesCS1A01G138800.1	Wheat	golgi, unclear	75.38	75.15
EER95278	Sorghum	mitochondrion	76.31	75.15
Os10t0320400-01	Rice	mitochondrion	74.77	75.0
TraesCS1B01G148500.1	Wheat	mitochondrion	75.08	74.85
TraesCS1D01G132700.1	Wheat	golgi, unclear	74.77	74.54
HORVU7Hr1G085110.1	Barley	cytosol	34.15	53.62
CDX88259	Canola	nucleus	38.46	28.87
CDY72042	Canola	cytosol	36.62	27.87
CDX94569	Canola	plastid	29.85	25.87
CDY16654	Canola	plastid	29.54	25.6
CDY21312	Canola	plastid	29.23	25.4
CDX90874	Canola	plastid	29.23	25.4
CDX96834	Canola	plastid	28.62	24.54
CDX83971	Canola	plastid	28.62	24.54
CDX88260	Canola	nucleus	9.23	19.48
CDY33548	Canola	cytosol, mitochondrion	7.38	19.05
Zm00001d044380_P001	Maize	cytosol	8.31	16.36
Zm00001d010316_P001	Maize	cytosol	3.69	16.0
CDX97316	Canola	plastid	18.77	12.84

Protein Annotations

Gene3D:1.10.287.80	MapMan:2.4.6.2.3	Gene3D:3.40.1380.10	GO:A0A078CTX0	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu
InterPro:ATP_synth_F1_gsu_CS	EnsemblPlants:CDX79484	ProteinID:CDX79484	ProteinID:CDX79484.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0016020
GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	EnsemblPlantsGene:GSBRNA2T00132227001	HAMAP:MF_00815	PFAM:PF00231
PIRSF:PIRSF039089	PRINTS:PR00126	ScanProsite:PS00153	PANTHER:PTHR11693	PANTHER:PTHR11693:SF26	SUPFAM:SSF52943
TIGRFAMs:TIGR01146	UniParc:UPI0004EDE813	:	:	:	:

Description

BnaC03g18200D

Coordinates

chrLK031818:+:302585..305021

Molecular Weight (calculated)

35418.0 Da

IEP (calculated)

9.550

GRAVY (calculated)

-0.090

Length

325 amino acids

Sequence
(BLAST)

001: MAMAVFRREG RRLLPSIAAR PIAPIRSPLS SDQEEGPLGV RSISTQVVRN RMKSVKNIQK ITKAMKMVAA SKLRAVQGRA ENSRGLWQPF TALLGDNPSI
101: DVKKSVVVTL SSDKGLCGGI NSTVVKVSRA LYKLNAGPEK DVKFVIVGEK AKAIMFRDSK NDISLTVTEL NKNPLNYAQV SVLADDILKN VEFDALRIVY
201: NKFHSVVAFL PTVATVLSPE IIEKESEVGG KLGELDSYEI EGGETKGEIL QNLAEFQFSC VMFNAVLENA CSEMGARMSA MDSSSRNAGE MLDRLTLTYN
301: RTRQASITTE LIEIISGASA LEAAK

Best Arabidopsis Sequence Match ( AT2G33040.1 )
(BLAST)

001: MAMAVFRREG RRLLPSIAAR PIAAIRSPLS SDQEEGLLGV RSISTQVVRN RMKSVKNIQK ITKAMKMVAA SKLRAVQGRA ENSRGLWQPF TALLGDNPSI
101: DVKKSVVVTL SSDKGLCGGI NSTVVKVSRA LYKLNAGPEK EVQFVIVGEK AKAIMFRDSK NDIVLSVTEL NKNPLNYAQV SVLADDILKN VEFDALRIVY
201: NKFHSVVAFL PTVSTVLSPE IIEKESEIGG KLGELDSYEI EGGETKGEIL QNLAEFQFSC VMFNAVLENA CSEMGARMSA MDSSSRNAGE MLDRLTLTYN
301: RTRQASITTE LIEIISGASA LEAAK

Arabidopsis Description

ATPCATP synthase subunit gamma, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q96250]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.