CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37753	Canola	mitochondrion	15.87	7.78
CDY23771	Canola	mitochondrion	19.05	7.48
CDX84716	Canola	mitochondrion	19.05	7.38
CDX79484	Canola	mitochondrion	19.05	7.38
CDY17130	Canola	mitochondrion	19.05	7.38
CDY19433	Canola	mitochondrion	19.05	7.38
CDX90874	Canola	plastid	19.05	6.42
CDY21312	Canola	plastid	19.05	6.42
CDX94569	Canola	plastid	19.05	6.4
CDY16654	Canola	plastid	19.05	6.4
CDX83971	Canola	plastid	19.05	6.33
CDX96834	Canola	plastid	19.05	6.33
CDX88260	Canola	nucleus	7.14	5.84
CDX97316	Canola	plastid	15.08	4.0
CDY72042	Canola	cytosol	10.32	3.04
CDX88259	Canola	nucleus	9.52	2.77
Os07t0513100-01	Rice	mitochondrion, nucleus	6.35	0.81

Protein Annotations

MapMan:19.3.3.1	Gene3D:3.10.20.90	GO:A0A078H9Q3	UniProt:A0A078H9Q3	InterPro:Atg8-like	EnsemblPlants:CDY33548
ProteinID:CDY33548	ProteinID:CDY33548.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006914	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00054825001
PFAM:PF02991	PANTHER:PTHR10969	PANTHER:PTHR10969:SF47	SUPFAM:SSF54236	UniParc:UPI0004EF4B8E	InterPro:Ubiquitin-like_domsf

Description

BnaC02g26080DAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9Q3]

Coordinates

chrLK032316:-:410196..411603

Molecular Weight (calculated)

14134.1 Da

IEP (calculated)

9.776

GRAVY (calculated)

-0.269

Length

126 amino acids

Sequence
(BLAST)

001: MAKNSFKLSN PLKVRMAEST RIREKYQDRV PVIVEKAGQS DVPDIDKKKY LVPADLTVGQ FVYVVRKRIK LGAEKAIFVF VKNTLPPTAS LMSAIYEEHK
101: DEDGFLYMTY SGENTFGSAS ANIALP

Best Arabidopsis Sequence Match ( AT4G21980.1 )
(BLAST)

001: MAKSSFKISN PLEARMSESS RIREKYPDRI PVIVEKAGQS DVPDIDKKKY LVPADLTVGQ FVYVVRKRIK LGAEKAIFVF VKNTLPPTAA LMSAIYEEHK
101: DEDGFLYMTY SGENTFGSLT VA

Arabidopsis Description

APG8AAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A8MS84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.