Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
- nucleus 3
- mitochondrion 4
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0513000-01 | Rice | plastid | 4.56 | 12.57 |
| PGSC0003DMT400071659 | Potato | plastid | 4.56 | 12.43 |
| Solyc12g005060.1.1 | Tomato | plastid | 4.36 | 12.32 |
| AT1G15700.1 | Thale cress | plastid | 4.66 | 11.92 |
| VIT_19s0090g00480.t01 | Wine grape | mitochondrion | 3.55 | 11.36 |
| CDX83971 | Canola | plastid | 4.36 | 11.35 |
| CDX96834 | Canola | plastid | 4.15 | 10.82 |
| Bra016652.1-P | Field mustard | plastid | 4.05 | 10.55 |
| KRH46189 | Soybean | plastid | 3.65 | 10.53 |
| Os10t0320400-01 | Rice | mitochondrion | 2.84 | 8.64 |
| CDY33548 | Canola | cytosol, mitochondrion | 0.81 | 6.35 |
| CDX88260 | Canola | nucleus | 0.81 | 5.19 |
Protein Annotations
| Gene3D:1.10.150.80 | MapMan:16.8.1.2.1 | InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.500 | UniProt:A0A0N7KNI7 | ProteinID:BAT01730.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0044237 | GO:GO:0090305 | InterPro:HRDC-like_sf |
| InterPro:HRDC_dom | InterPro:IPR002121 | EnsemblPlantsGene:Os07g0513100 | EnsemblPlants:Os07t0513100-01 | PFAM:PF00570 | PFAM:PF01612 |
| PFscan:PS50967 | PANTHER:PTHR12124 | PANTHER:PTHR12124:SF41 | InterPro:RNaseH-like_sf | SMART:SM00474 | SUPFAM:SSF47819 |
| SUPFAM:SSF53098 | TMHMM:TMhelix | UniParc:UPI0001C7CB3A | SEG:seg | : | : |
Description
Similar to RRP6-like protein 3. (Os07t0513100-01)
Coordinates
chr7:-:19658119..19668106
Molecular Weight (calculated)
110434.0 Da
IEP (calculated)
7.997
GRAVY (calculated)
-0.493
Length
987 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTANLRSRA AAAAAAAACL AALAVAALLH RRRRRGRARA PASPGLLGGR RGRRPRRACE EEEKPQARFR RVVADNSYSA FKHLRRQGAG PVGSGHHGSE
101: AQPTSQESSQ KVHPFEEEIT SLLNNPPDFQ NFMPGDRCPE MSTSYNWVET DAQLEDLARL LDDEKAFAVD TEQHSLRSFL GYTALMQIST QKADYLIDTI
201: ALHDVMSILR PVFANPSICK IFHGADNDVL WLQRDFHIYV VNMFDTAKAC EVLSKPQKSL AYLLELYCGV TTDKTMQRED WRLRPLTPEM IQYARCDAHY
301: LLYIANCLAS ELHAKTYDSP NDKINFFFEA SHRSNMVCMQ LYAKEIECPP GASSAASILS KNLQSHGLDS YKSSEVKDLV WKICAWRDLM ARMHDESLRY
401: VLSDQAIASL AVSVPRGPTE VCSAILETET SNSTVYPSLP PPSPIVVAHA EELRYLIEDI TVSMDAIFKN LLEKYKDPSR LCRLSVFNYN LVSQLSLKQK
501: NMFSFASSGE KLLMAPTNKK ASRELFIKKF SCKSPVYHNC RIYASDGRLL CYCDRKKLEW YIQRNLAKLI EDNPPAIVLL FEPKGRPEDE DNDFYIQSKK
601: NICVGCGEKS HYIRYRIIPS CYRMHFPEHL KSHRSHDIVL LCVDCHEIAH SAAEKYKRQI AKEFGVPLFV QKILNSGDIS LIAGASLSED KSNGTGVSPL
701: QLRTAAMALL RHGSNMPLKR YEELMQIVKS YYGGRDVTPE DLEMALLVGM SPNERRRHSK KNGFSYRSQA QNVIRKSNSN GIVENNEHDP ENGYAEQFSK
801: NGVENNSHPD IDENNNQLGI DEHTSQPGSG GNKIHGPTLS KESTIYPPRM ANPISDSSIE ADTVQQASLG GNPANGDLDR DPCGSNNSNQ AIPQNGDKKI
901: SLLGHGHHGK QVVELLLSNG GEEAINQFSQ RWRQVFVASL HPRYLPSGWN IKHSGRRDFG DFSVYKPSKK PPAADQSETL AAAAVVP
101: AQPTSQESSQ KVHPFEEEIT SLLNNPPDFQ NFMPGDRCPE MSTSYNWVET DAQLEDLARL LDDEKAFAVD TEQHSLRSFL GYTALMQIST QKADYLIDTI
201: ALHDVMSILR PVFANPSICK IFHGADNDVL WLQRDFHIYV VNMFDTAKAC EVLSKPQKSL AYLLELYCGV TTDKTMQRED WRLRPLTPEM IQYARCDAHY
301: LLYIANCLAS ELHAKTYDSP NDKINFFFEA SHRSNMVCMQ LYAKEIECPP GASSAASILS KNLQSHGLDS YKSSEVKDLV WKICAWRDLM ARMHDESLRY
401: VLSDQAIASL AVSVPRGPTE VCSAILETET SNSTVYPSLP PPSPIVVAHA EELRYLIEDI TVSMDAIFKN LLEKYKDPSR LCRLSVFNYN LVSQLSLKQK
501: NMFSFASSGE KLLMAPTNKK ASRELFIKKF SCKSPVYHNC RIYASDGRLL CYCDRKKLEW YIQRNLAKLI EDNPPAIVLL FEPKGRPEDE DNDFYIQSKK
601: NICVGCGEKS HYIRYRIIPS CYRMHFPEHL KSHRSHDIVL LCVDCHEIAH SAAEKYKRQI AKEFGVPLFV QKILNSGDIS LIAGASLSED KSNGTGVSPL
701: QLRTAAMALL RHGSNMPLKR YEELMQIVKS YYGGRDVTPE DLEMALLVGM SPNERRRHSK KNGFSYRSQA QNVIRKSNSN GIVENNEHDP ENGYAEQFSK
801: NGVENNSHPD IDENNNQLGI DEHTSQPGSG GNKIHGPTLS KESTIYPPRM ANPISDSSIE ADTVQQASLG GNPANGDLDR DPCGSNNSNQ AIPQNGDKKI
901: SLLGHGHHGK QVVELLLSNG GEEAINQFSQ RWRQVFVASL HPRYLPSGWN IKHSGRRDFG DFSVYKPSKK PPAADQSETL AAAAVVP
001: MELKEKAKVV ITVASLVAVT ILFVTEYRRR RQRRKQTSSL SSCYLHSELK PQFGFKRVLA DNSYSEFKHL KLVDASSSSL EKPSNGHPYE TEITVLLENP
101: QIEFGFLRGE CSLEMSDSYV WVETESQLKE LAEILAKEQV FAVDTEQHSL RSFLGFTALI QISTHEEDFL VDTIALHDVM SILRPVFSDP NICKVFHGAD
201: NDVIWLQRDF HIYVVNMFDT AKACEVLSKP QRSLAYLLET VCGVATNKLL QREDWRQRPL SEEMVRYART DAHYLLYIAD SLTTELKQLA TDSSSPDDRF
301: HFLLEASRRS NMTCLQLYTK ETEDFPGSAA SSSIIYRHLN GHGDKSNISL NAEELVRKLC AWRDLMGRIH DESTRYVLSD QAIVGLSCKQ PTTTEEIYDT
401: IAHIDLATES SPSLSSSVQS PYPVICSHLD DIYKMILDKL AKLDDLLPVV LKKCLGTNGT CPISVFNYSL LVNFKTKLSS HSAPKQNGHK NFKQQFTRKA
501: SRELFVKKFS CKAPVYHNCR IYANDGRLLC YCDKRKLEWY LNRGLAKLVE ENPPAIMLLF EPKGRPEDEG NDFYIQTKRN ICVGCGEGKH YLRYRIIPSC
601: YRVHFPEHLK SHRSHDIVLL CVDCHEVAHA AAERYKKQIA TEFGIPLFVR RVLDSKEAQG TSSLVEDEST GDSEDAGVSP LHLRSAAMAL LRHGNRMPSS
701: RREELLQTVK MYYGGRDLSE EDLEKALLIG LSPHERRKLE RKKGVSFKHS AEVAGMDKQE DENNDGEALA DFEKIMTVER STVVDDSGDG TSEGDGAKEL
801: NDTQCNGNTL HQQNSKLSLL GHGPHGKQIV EYLLREHGED GVRDFCQRWR KVFVDAVHPR HLPGGWNVSH SGRRDFGEFS VYNPTKRLST E
101: QIEFGFLRGE CSLEMSDSYV WVETESQLKE LAEILAKEQV FAVDTEQHSL RSFLGFTALI QISTHEEDFL VDTIALHDVM SILRPVFSDP NICKVFHGAD
201: NDVIWLQRDF HIYVVNMFDT AKACEVLSKP QRSLAYLLET VCGVATNKLL QREDWRQRPL SEEMVRYART DAHYLLYIAD SLTTELKQLA TDSSSPDDRF
301: HFLLEASRRS NMTCLQLYTK ETEDFPGSAA SSSIIYRHLN GHGDKSNISL NAEELVRKLC AWRDLMGRIH DESTRYVLSD QAIVGLSCKQ PTTTEEIYDT
401: IAHIDLATES SPSLSSSVQS PYPVICSHLD DIYKMILDKL AKLDDLLPVV LKKCLGTNGT CPISVFNYSL LVNFKTKLSS HSAPKQNGHK NFKQQFTRKA
501: SRELFVKKFS CKAPVYHNCR IYANDGRLLC YCDKRKLEWY LNRGLAKLVE ENPPAIMLLF EPKGRPEDEG NDFYIQTKRN ICVGCGEGKH YLRYRIIPSC
601: YRVHFPEHLK SHRSHDIVLL CVDCHEVAHA AAERYKKQIA TEFGIPLFVR RVLDSKEAQG TSSLVEDEST GDSEDAGVSP LHLRSAAMAL LRHGNRMPSS
701: RREELLQTVK MYYGGRDLSE EDLEKALLIG LSPHERRKLE RKKGVSFKHS AEVAGMDKQE DENNDGEALA DFEKIMTVER STVVDDSGDG TSEGDGAKEL
801: NDTQCNGNTL HQQNSKLSLL GHGPHGKQIV EYLLREHGED GVRDFCQRWR KVFVDAVHPR HLPGGWNVSH SGRRDFGEFS VYNPTKRLST E
Arabidopsis Description
RRP6L3Protein RRP6-like 3 [Source:UniProtKB/Swiss-Prot;Acc:A9LLI8]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.