CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96834	Canola	plastid	96.83	96.83
AT1G15700.1	Thale cress	plastid	86.02	84.46
VIT_19s0090g00480.t01	Wine grape	mitochondrion	56.99	70.13
KRH46189	Soybean	plastid	58.84	65.2
CDY16654	Canola	plastid	63.85	64.53
CDX90874	Canola	plastid	63.59	64.44
CDY21312	Canola	plastid	63.59	64.44
PGSC0003DMT400071659	Potato	plastid	61.48	64.36
CDX94569	Canola	plastid	63.59	64.27
Solyc12g005060.1.1	Tomato	plastid	56.2	61.03
CDY23771	Canola	mitochondrion	24.8	29.28
CDY19433	Canola	mitochondrion	24.8	28.92
CDY17130	Canola	mitochondrion	24.8	28.92
CDX84716	Canola	mitochondrion	24.54	28.62
CDX79484	Canola	mitochondrion	24.54	28.62
CDX97316	Canola	plastid	33.25	26.53
CDY37753	Canola	mitochondrion	16.62	24.51
CDY33548	Canola	cytosol, mitochondrion	6.33	19.05
CDX88260	Canola	nucleus	7.12	17.53
CDY72042	Canola	cytosol	14.25	12.65
CDX88259	Canola	nucleus	14.25	12.47
Os07t0513100-01	Rice	mitochondrion, nucleus	11.35	4.36

Protein Annotations

MapMan:1.1.9.2.3	GO:A0A078D3P0	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS	EnsemblPlants:CDX83971
ProteinID:CDX83971	ProteinID:CDX83971.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0045261
GO:GO:0046933	EnsemblPlantsGene:GSBRNA2T00139754001	HAMAP:MF_00815	PFAM:PF00231	PRINTS:PR00126	ScanProsite:PS00153
PANTHER:PTHR11693	PANTHER:PTHR11693:SF23	SUPFAM:SSF52943	TIGRFAMs:TIGR01146	UniParc:UPI0001BA9268	SEG:seg

Description

BnaC08g16740D

Coordinates

chrLK031834:+:1479681..1480820

Molecular Weight (calculated)

41810.5 Da

IEP (calculated)

7.708

GRAVY (calculated)

-0.182

Length

379 amino acids

Sequence
(BLAST)

001: MTGSISTSWL LPSPTNSKSF STSKSISFPL TTNPRRSPDR FPSRSPSPSL QIRAGIRELR ERIDTVKNTQ KITEAMKLVA AARVRRAQEA VINCRPFTET
101: LVGILHSINQ CAQLEDIDFP LSNVRPVKRV ALVVVTGDKG LCGGFNNAVI KKANVRVDEL KQRGIECVVV SVGKKGNAYF SRRDDVEVDK CIEGGGVYPT
201: AKEAQVIADD VFSLFVSEEV DKVELVYTKF VSLVKSDPVI HTLLPLTMKG ESCDVEGVCV DAMEDEMFRL TSKDGKLSVE RRKVEVERPE ISPLMQFEQD
301: PVQILDAMMP LYLNSQILRA LQESLASELA SRMSAMSNAT DNAVELKKSL TVAYNRERQA KITGELLEIV AGAEALRGT

Best Arabidopsis Sequence Match ( AT1G15700.1 )
(BLAST)

001: MTGSISTSWL LSSPSNSNSA SSSESYSFIA TLKPVRYYPF QSLTPNRISS RSPLPSIQIR AGIRELRERI DSVKNTQKIT EAMRLVAAAR VRRAQDAVIK
101: GRPFTETLVE ILYSINQSAQ LEDIDFPLSI VRPVKRVALV VVTGDKGLCG GFNNAVTKKA TLRVQELKQR GIDCVVISVG KKGNAYFSRR DEFDVDKCIE
201: GGGVFPTTKE AQVIADDVFS LFVSEEVDKV ELVYTKFVSL VKSDPVIHTL LPLSMKGESC DVKGECVDAI EDEMFRLTSK DGKLAVERTK LEVEKPEISP
301: LMQFEQDPVQ ILDAMMPLYL NSQILRALQE SLASELASRM NAMSNATDNA VELKKNLTMA YNRARQAKIT GELLEIVAGA EALRES

Arabidopsis Description

ATPC2ATP synthase gamma chain 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01909]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.