Factsheet for PGSC0003DMT400071659

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005060.1.1	Tomato	plastid	81.49	84.53
VIT_19s0090g00480.t01	Wine grape	mitochondrion	60.22	70.78
PGSC0003DMT400042499	Potato	extracellular, plastid	66.3	63.66
Bra016652.1-P	Field mustard	plastid	64.36	61.48
CDX83971	Canola	plastid	64.36	61.48
CDX96834	Canola	plastid	64.09	61.21
KRH46189	Soybean	plastid	56.35	59.65
AT1G15700.1	Thale cress	plastid	63.54	59.59
PGSC0003DMT400063336	Potato	mitochondrion	23.76	26.54
Os07t0513100-01	Rice	mitochondrion, nucleus	12.43	4.56

Protein Annotations

MapMan:1.1.9.2.3	EntrezGene:102603946	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009653	GO:GO:0009987	GO:GO:0015986	GO:GO:0016020
GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	GO:GO:0099132	GO:GO:2000067	UniProt:M1CP40
HAMAP:MF_00815	PFAM:PF00231	EnsemblPlantsGene:PGSC0003DMG400027875	PGSC:PGSC0003DMG400027875	EnsemblPlants:PGSC0003DMT400071659	PRINTS:PR00126
ScanProsite:PS00153	PANTHER:PTHR11693	PANTHER:PTHR11693:SF23	SUPFAM:SSF52943	TIGRFAMs:TIGR01146	UniParc:UPI000294DD2A
RefSeq:XP_006365954.1	:	:	:	:	:

Description

ATP synthase gamma chain [Source:PGSC_GENE;Acc:PGSC0003DMG400027875]

Coordinates

chr12:+:9118456..9120502

Molecular Weight (calculated)

40337.8 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.090

Length

362 amino acids

Sequence
(BLAST)

001: MASSLSFTSH LVNFPISDPK LANRNPTFQS LKLPLPSIHC GIRELRQRID TIKNIQKVTE AMKLVAAAKI RRAQEAVIST RPFAETLADM LYNITQQLQF
101: EDVDIPLTEI RPVKKVALVV IAGERGLCGG FNNGIFKKAE ARMAELTNLG IGYTLVSVGK KSNAYFRRKK GEFVDRFVEG ESFPTAKEAQ VIADDVFSLF
201: ISEEVDKVEL LYAKFVSLIK SDPVIHSLLP LTSKGEVFDV NGRSVDVDED EFFRLTTKGG KLTVVRDHLR VKRGEFLPNL EFEQDPAQIL DALMPLYLNS
301: QILRALQESF ASELAARMNA MSSATDNAVE LRRDLSIAYN RERQAKITGE ILEIVAGADA LT

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.