Factsheet for Solyc12g005060.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 28183294

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071659	Potato	plastid	84.53	81.49
VIT_19s0090g00480.t01	Wine grape	mitochondrion	59.89	67.86
Solyc02g080540.1.1	Tomato	plastid	64.76	59.95
KRH46189	Soybean	plastid	55.87	57.02
Bra016652.1-P	Field mustard	plastid	61.6	56.73
CDX96834	Canola	plastid	61.6	56.73
CDX83971	Canola	plastid	61.03	56.2
AT1G15700.1	Thale cress	plastid	61.03	55.18
Solyc03g115110.2.1	Tomato	plastid	22.64	24.38
Os07t0513100-01	Rice	mitochondrion, nucleus	12.32	4.36

Protein Annotations

MapMan:1.1.9.2.3	Gene3D:1.10.287.80	Gene3D:3.40.1380.10	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009653	GO:GO:0009987	GO:GO:0015986
GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	GO:GO:0099132	GO:GO:2000067
UniProt:K4DB44	HAMAP:MF_00815	PFAM:PF00231	PRINTS:PR00126	ScanProsite:PS00153	PANTHER:PTHR11693
PANTHER:PTHR11693:SF23	SUPFAM:SSF52943	EnsemblPlantsGene:Solyc12g005060.1	EnsemblPlants:Solyc12g005060.1.1	TIGRFAMs:TIGR01146	UniParc:UPI000276A16A
SEG:seg	:	:	:	:	:

Description

ATP synthase gamma chain 2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G15700) UniProtKB/Swiss-Prot;Acc:Q01909]

Coordinates

chr12:+:28551..29600

Molecular Weight (calculated)

39267.6 Da

IEP (calculated)

7.920

GRAVY (calculated)

-0.078

Length

349 amino acids

Sequence
(BLAST)

001: MASSLSFTCH VVNFPICDPK LTNRNPSFRS LQLPLRSIQC GIRELRGRID TINKTQKVTE AMKLVAAAKI RRAQEAVIST RPFAETLVDM LYNITQQLQF
101: EEVDIPLTEI RPVKKVGLVV IGGERGLCGG FNNGIFKKAE SRMAELTSLG IGYTLISVGK KSNAYFRNVD RFVVDRFESF PTAKEAQVIA DDVFSLFISE
201: QVDKVELLYT KFVSLIKSDP VIHTLLPLRG EEFFDEDEFF RLTSKEGKLS VVRDLRVKKG EFLRNLEYEQ DPAQILDALM PLYLNSQILR ALQESFASEV
301: AARMNAMTSA TDNAVELRRN LSIAYNRERQ AKITGEILEI VAGADALIT

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.