Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 11
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
plastid: 22908117 plastid: 26371478 plastid: 28183294 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
28183294
doi
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc02g081170.2.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G04640.1 | Solyc02g081170.2.1 | AT4G22240.1 | 24937144 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400042499 | Potato | extracellular, plastid | 98.41 | 98.41 |
KRH20854 | Soybean | plastid | 85.68 | 86.13 |
KRH11433 | Soybean | nucleus, plastid | 85.15 | 85.6 |
AT4G04640.1 | Thale cress | plastid | 81.7 | 82.57 |
GSMUA_Achr2P13970_001 | Banana | mitochondrion | 53.32 | 82.38 |
CDX94569 | Canola | plastid | 81.17 | 81.6 |
CDY16654 | Canola | plastid | 81.17 | 81.6 |
Bra029511.1-P | Field mustard | plastid | 80.9 | 81.33 |
Bra000802.1-P | Field mustard | plastid | 79.84 | 80.48 |
CDY21312 | Canola | plastid | 79.84 | 80.48 |
CDX90874 | Canola | plastid | 79.84 | 80.48 |
Zm00001d021620_P001 | Maize | plastid | 70.56 | 74.09 |
KXG36319 | Sorghum | plastid | 70.56 | 73.89 |
Zm00001d006475_P001 | Maize | cytosol, mitochondrion | 45.36 | 73.39 |
Os07t0513000-01 | Rice | plastid | 69.23 | 72.91 |
TraesCS2A01G223600.1 | Wheat | plastid | 67.37 | 70.95 |
TraesCS2B01G273900.1 | Wheat | plastid | 67.37 | 70.95 |
TraesCS2D01G229600.1 | Wheat | plastid | 67.37 | 70.75 |
Solyc12g005060.1.1 | Tomato | plastid | 59.95 | 64.76 |
Bra018503.1-P | Field mustard | plastid | 77.72 | 58.13 |
EES05204 | Sorghum | plastid | 18.3 | 32.39 |
Solyc03g115110.2.1 | Tomato | plastid | 23.34 | 27.16 |
Protein Annotations
MapMan:1.1.9.2.3 | InterPro:ATP_synth_F1_ATPase_gsu | InterPro:ATP_synth_F1_gsu | InterPro:ATP_synth_F1_gsu_CS | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 |
GO:GO:0006139 | GO:GO:0006754 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009507 | GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009772 |
GO:GO:0009941 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0015986 | GO:GO:0016020 | GO:GO:0016787 |
GO:GO:0045261 | GO:GO:0046933 | GO:GO:0099132 | UniProt:K4B9S5 | HAMAP:MF_00815 | PFAM:PF00231 |
PRINTS:PR00126 | ScanProsite:PS00153 | PANTHER:PTHR11693 | PANTHER:PTHR11693:SF23 | SUPFAM:SSF52943 | EnsemblPlantsGene:Solyc02g080540.1 |
EnsemblPlants:Solyc02g080540.1.1 | TIGRFAMs:TIGR01146 | UniParc:UPI0002769030 | SEG:seg | : | : |
Description
ATP synthase gamma chain 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G04640) UniProtKB/Swiss-Prot;Acc:Q01908]
Coordinates
chr2:+:44747593..44748726
Molecular Weight (calculated)
41495.0 Da
IEP (calculated)
8.178
GRAVY (calculated)
-0.106
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCSNLTMLV SSKPSLSESS ALSFRSAVSS FQLPNHNLSG PSNPSRSSSV IPVRCGLRDL RDRIDSVKNT QKITEAMKLV AAAKVRRAQE AVVGARPFSE
101: TLVEVLYNIN EQLQTDDIDV PLTKVRPVKK VALVVVTGDR GLCGGFNNYI IKKAEARIRD LKALGLDYTI ISVGKKGNSY FLRRPYIPVD KFLEGSNLPT
201: AKDAQAIADD VFSFFVSEEV DKVELLYTKF VSLVKSEPVI HTLLPLSPKG EICDINGNCV DAAEDEFFRL TTKEGKLTVE RDVMRTKTTD FSAILQFEQD
301: PVQILDALLP LYLNSQILRA LQESLASELA SRMSAMSSAT DNASELKKNL SRVYNRQRQA KITGEILEIV AGADALV
101: TLVEVLYNIN EQLQTDDIDV PLTKVRPVKK VALVVVTGDR GLCGGFNNYI IKKAEARIRD LKALGLDYTI ISVGKKGNSY FLRRPYIPVD KFLEGSNLPT
201: AKDAQAIADD VFSFFVSEEV DKVELLYTKF VSLVKSEPVI HTLLPLSPKG EICDINGNCV DAAEDEFFRL TTKEGKLTVE RDVMRTKTTD FSAILQFEQD
301: PVQILDALLP LYLNSQILRA LQESLASELA SRMSAMSSAT DNASELKKNL SRVYNRQRQA KITGEILEIV AGADALV
001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV
Arabidopsis Description
ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.