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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
plastid: 22908117
plastid: 26371478
plastid: 28183294
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 28183294 doi
R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g081170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G04640.1 Solyc02g081170.2.1 AT4G22240.1 24937144
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400042499 Potato extracellular, plastid 98.41 98.41
KRH20854 Soybean plastid 85.68 86.13
KRH11433 Soybean nucleus, plastid 85.15 85.6
AT4G04640.1 Thale cress plastid 81.7 82.57
GSMUA_Achr2P13970_001 Banana mitochondrion 53.32 82.38
CDX94569 Canola plastid 81.17 81.6
CDY16654 Canola plastid 81.17 81.6
Bra029511.1-P Field mustard plastid 80.9 81.33
Bra000802.1-P Field mustard plastid 79.84 80.48
CDY21312 Canola plastid 79.84 80.48
CDX90874 Canola plastid 79.84 80.48
Zm00001d021620_P001 Maize plastid 70.56 74.09
KXG36319 Sorghum plastid 70.56 73.89
Zm00001d006475_P001 Maize cytosol, mitochondrion 45.36 73.39
Os07t0513000-01 Rice plastid 69.23 72.91
TraesCS2A01G223600.1 Wheat plastid 67.37 70.95
TraesCS2B01G273900.1 Wheat plastid 67.37 70.95
TraesCS2D01G229600.1 Wheat plastid 67.37 70.75
Solyc12g005060.1.1 Tomato plastid 59.95 64.76
Bra018503.1-P Field mustard plastid 77.72 58.13
EES05204 Sorghum plastid 18.3 32.39
Solyc03g115110.2.1 Tomato plastid 23.34 27.16
Protein Annotations
MapMan:1.1.9.2.3InterPro:ATP_synth_F1_ATPase_gsuInterPro:ATP_synth_F1_gsuInterPro:ATP_synth_F1_gsu_CSGO:GO:0003674GO:GO:0003824
GO:GO:0005215GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006091
GO:GO:0006139GO:GO:0006754GO:GO:0006810GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009772
GO:GO:0009941GO:GO:0009987GO:GO:0015979GO:GO:0015986GO:GO:0016020GO:GO:0016787
GO:GO:0045261GO:GO:0046933GO:GO:0099132UniProt:K4B9S5HAMAP:MF_00815PFAM:PF00231
PRINTS:PR00126ScanProsite:PS00153PANTHER:PTHR11693PANTHER:PTHR11693:SF23SUPFAM:SSF52943EnsemblPlantsGene:Solyc02g080540.1
EnsemblPlants:Solyc02g080540.1.1TIGRFAMs:TIGR01146UniParc:UPI0002769030SEG:seg::
Description
ATP synthase gamma chain 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G04640) UniProtKB/Swiss-Prot;Acc:Q01908]
Coordinates
chr2:+:44747593..44748726
Molecular Weight (calculated)
41495.0 Da
IEP (calculated)
8.178
GRAVY (calculated)
-0.106
Length
377 amino acids
Sequence
(BLAST)
001: MSCSNLTMLV SSKPSLSESS ALSFRSAVSS FQLPNHNLSG PSNPSRSSSV IPVRCGLRDL RDRIDSVKNT QKITEAMKLV AAAKVRRAQE AVVGARPFSE
101: TLVEVLYNIN EQLQTDDIDV PLTKVRPVKK VALVVVTGDR GLCGGFNNYI IKKAEARIRD LKALGLDYTI ISVGKKGNSY FLRRPYIPVD KFLEGSNLPT
201: AKDAQAIADD VFSFFVSEEV DKVELLYTKF VSLVKSEPVI HTLLPLSPKG EICDINGNCV DAAEDEFFRL TTKEGKLTVE RDVMRTKTTD FSAILQFEQD
301: PVQILDALLP LYLNSQILRA LQESLASELA SRMSAMSSAT DNASELKKNL SRVYNRQRQA KITGEILEIV AGADALV
Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)
001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV
Arabidopsis Description
ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.