CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12270

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04640.1	EES12270	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021620_P001	Maize	plastid	95.56	95.82
Zm00001d006475_P001	Maize	cytosol, mitochondrion	59.44	91.85
Os07t0513000-01	Rice	plastid	91.11	91.62
TraesCS2B01G273900.1	Wheat	plastid	85.28	85.75
TraesCS2A01G223600.1	Wheat	plastid	85.28	85.75
TraesCS2D01G229600.1	Wheat	plastid	85.28	85.52
GSMUA_Achr2P13970_001	Banana	mitochondrion	52.22	77.05
KRH20854	Soybean	plastid	75.56	72.53
KRH11433	Soybean	nucleus, plastid	75.28	72.27
Solyc02g080540.1.1	Tomato	plastid	73.89	70.56
CDY21312	Canola	plastid	73.06	70.32
CDX90874	Canola	plastid	73.06	70.32
Bra000802.1-P	Field mustard	plastid	73.06	70.32
PGSC0003DMT400042499	Potato	extracellular, plastid	73.61	70.29
CDY16654	Canola	plastid	73.06	70.13
AT4G04640.1	Thale cress	plastid	72.5	69.97
Bra029511.1-P	Field mustard	plastid	72.78	69.87
CDX94569	Canola	plastid	72.22	69.33
Bra018503.1-P	Field mustard	plastid	69.17	49.4
EES05204	Sorghum	plastid	25.83	43.66
EER95278	Sorghum	mitochondrion	23.89	26.06

Protein Annotations

MapMan:1.1.9.2.3	UniProt:A0A1B6QEH8	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986
GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	GO:GO:0099132	EnsemblPlants:KXG36319
ProteinID:KXG36319	ProteinID:KXG36319.1	HAMAP:MF_00815	PFAM:PF00231	PRINTS:PR00126	ScanProsite:PS00153
PANTHER:PTHR11693	PANTHER:PTHR11693:SF23	EnsemblPlantsGene:SORBI_3002G316700	SUPFAM:SSF52943	TIGRFAMs:TIGR01146	UniParc:UPI0001FCD631
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:68961723..68964042

Molecular Weight (calculated)

39723.0 Da

IEP (calculated)

7.740

GRAVY (calculated)

-0.118

Length

360 amino acids

Sequence
(BLAST)

001: MSCSHLSTAW SSSALASSAS TTQRRGSSAP RSGLVVRCSL RELRTRIDSV KNTQKITEAM KLVAAAKVRR AQEAVVSSRP FSEALVEVLY NMNQEIQTED
101: IDLPLTRTRP VKKVALVVLT GERGLCGSFN NNVLKKAEAR IEELKQLGLQ YSVISVGKKG NAYFQRRPYI PLERDLEVNG VPTVKDSQSI CDLVYSLFVS
201: EEVDKVELLY SKFVSLVRSD PIIQTLLPMS PKGEICDING VCVDATEDEL FRLTTKEGKL TVEREKVKIE TQPFSPVVQF EQDPVQILDA LLPLYLNSQI
301: LRALQESLAS ELAARMSAMS SATDNAIELA KNLSIAYNRQ RQAKITGEIL EIVAGAEALA

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.