CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79139
CDX82925

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04640.1	CDX79139	AT4G22240.1	24937144
AT4G04640.1	CDX82925	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16654	Canola	plastid	98.93	98.93
Bra029511.1-P	Field mustard	plastid	96.53	96.53
AT4G04640.1	Thale cress	plastid	91.47	91.96
CDX90874	Canola	plastid	89.87	90.11
CDY21312	Canola	plastid	89.87	90.11
GSMUA_Achr2P13970_001	Banana	mitochondrion	53.33	81.97
PGSC0003DMT400042499	Potato	extracellular, plastid	81.87	81.43
Solyc02g080540.1.1	Tomato	plastid	81.6	81.17
KRH20854	Soybean	plastid	80.53	80.53
KRH11433	Soybean	nucleus, plastid	80.27	80.27
Zm00001d006475_P001	Maize	cytosol, mitochondrion	45.87	73.82
KXG36319	Sorghum	plastid	69.33	72.22
Os07t0513000-01	Rice	plastid	68.8	72.07
Zm00001d021620_P001	Maize	plastid	68.8	71.87
TraesCS2D01G229600.1	Wheat	plastid	66.67	69.64
TraesCS2B01G273900.1	Wheat	plastid	66.4	69.55
TraesCS2A01G223600.1	Wheat	plastid	66.4	69.55
CDX83971	Canola	plastid	64.27	63.59
CDX96834	Canola	plastid	63.73	63.06
CDX97316	Canola	plastid	49.87	39.37
EES05204	Sorghum	plastid	18.4	32.39
CDY23771	Canola	mitochondrion	25.87	30.22
CDX79484	Canola	mitochondrion	25.87	29.85
CDX84716	Canola	mitochondrion	25.87	29.85
CDY17130	Canola	mitochondrion	25.87	29.85
CDY19433	Canola	mitochondrion	25.87	29.85
CDY37753	Canola	mitochondrion	17.87	26.07
CDY33548	Canola	cytosol, mitochondrion	6.4	19.05
CDX88260	Canola	nucleus	7.73	18.83
CDX88259	Canola	nucleus	15.2	13.16
CDY72042	Canola	cytosol	14.67	12.88

Protein Annotations

MapMan:1.1.9.2.3	GO:A0A078E1U0	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS	EnsemblPlants:CDX94569
ProteinID:CDX94569	ProteinID:CDX94569.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0045261
GO:GO:0046933	GO:GO:0099132	EnsemblPlantsGene:GSBRNA2T00157845001	HAMAP:MF_00815	PFAM:PF00231	PRINTS:PR00126
ScanProsite:PS00153	PANTHER:PTHR11693	PANTHER:PTHR11693:SF23	SUPFAM:SSF52943	TIGRFAMs:TIGR01146	UniParc:UPI0004EC63DA
SEG:seg	:	:	:	:	:

Description

BnaC09g22670D

Coordinates

chrLK031882:-:1271027..1272692

Molecular Weight (calculated)

41193.6 Da

IEP (calculated)

6.563

GRAVY (calculated)

-0.127

Length

375 amino acids

Sequence
(BLAST)

001: MACTNLTTMW GVSSNPSLSD SSSLSFRSVL NPLPLPNHNT SPSRSSSVAP IQSSLRELRD RIDSVKNTQK ITEAMKLVAA AKVRRAQEAV VNGRPFSETL
101: VEVLYNINEQ LQTDDIDVPL TKIRPVKKVA LVVVTGDRGL CGGFNNFIIK KSEARIKELQ GLGLDYTVIS VGKKGNSYFL RRPYIPVDKY LEAGTLPTAK
201: EAQAVADDVF SLFISEEVDK VELLYTKFVS LVKSEPVIHT LLPLSPKGEI CDINGNCVDA AEDELFRLTT KEGKLTVERE TFRTPTADFS PILQFEQDPV
301: QILDALLPLY LNSQILRALQ ESLASELAAR MSAMSSASDN ASDLKKSLSM VYNRKRQAKI TGEILEIVAG ANAQV

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.