Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72042 | Canola | cytosol | 37.01 | 13.35 |
| CDX88259 | Canola | nucleus | 34.42 | 12.24 |
| CDY37753 | Canola | mitochondrion | 20.13 | 12.06 |
| CDY23771 | Canola | mitochondrion | 20.13 | 9.66 |
| CDX79484 | Canola | mitochondrion | 19.48 | 9.23 |
| CDX84716 | Canola | mitochondrion | 19.48 | 9.23 |
| CDY17130 | Canola | mitochondrion | 19.48 | 9.23 |
| CDY19433 | Canola | mitochondrion | 19.48 | 9.23 |
| CDX90874 | Canola | plastid | 18.83 | 7.75 |
| CDY21312 | Canola | plastid | 18.83 | 7.75 |
| CDX94569 | Canola | plastid | 18.83 | 7.73 |
| CDY16654 | Canola | plastid | 18.83 | 7.73 |
| CDY33548 | Canola | cytosol, mitochondrion | 5.84 | 7.14 |
| CDX83971 | Canola | plastid | 17.53 | 7.12 |
| CDX96834 | Canola | plastid | 16.88 | 6.86 |
| CDX97316 | Canola | plastid | 13.64 | 4.42 |
| Os07t0513100-01 | Rice | mitochondrion, nucleus | 5.19 | 0.81 |
Protein Annotations
| EnsemblPlants:CDX88260 | EnsemblPlantsGene:GSBRNA2T00147751001 | ProteinID:CDX88260 | ProteinID:CDX88260.1 | UniParc:UPI0004EF041F | MapMan:35.1 |
Description
BnaC06g37040D
Coordinates
chrLK031855:-:41013..42493
Molecular Weight (calculated)
17100.3 Da
IEP (calculated)
8.686
GRAVY (calculated)
-0.462
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLVEEEPRK KKRKAVSVDA SHKRPKKVHK RLSLGPGKQS KSHKLSQGSS NSTSREAGSF VRPISPKSLV PSASAFENMG ESDDDIAELD ASYLQTNGYL
101: PPDATEEQIS MAAASMIRSH SLSEFDALCI VYNKFHSHYD LCLASHIYLF LFLP
101: PPDATEEQIS MAAASMIRSH SLSEFDALCI VYNKFHSHYD LCLASHIYLF LFLP
001: MEPNIYQLAL AALFGASFVA VSGFFMHFKA LNLVLERGKE RKENPDGDEP QNPTLVRRRS QVRRKVNDQY GRSPASLPDA TPFTDGGGGG GGDTGRSNGH
101: VYVDEIPPGL PRLHTPSEGR ASVHGASSIR KTGSFVRPIS PKSPVASASA FESVEESDDD DNLTNSEGLD ASYLQANGDN EMPADANEEQ ISMAASSMIR
201: SHSVSGDLHG VQPDPIAADI LRKEPEQETF VRLNVPLEVP TSDEVEAYKC LQECLELRKR YVFQETVAPW EKEVISDPST PKPNTEPFAH YPQGKSDHCF
301: EMQDGVVHVF ANKDAKEDLF PVADATAFFT DLHHVLKVIA AGNIRTLCHR RLVLLEQKFN LHLMLNADKE FLAQKSAPHR DFYNVRKVDT HVHHSACMNQ
401: KHLLRFIKSK LRKEPDEVVI FRDGTYLTLR EVFESLDLTG YDLNVDLLDV HADKSTFHRF DKFNLKYNPC GQSRLREIFL KQDNLIQGRF LGEITKQVFS
501: DLEASKYQMA EYRISIYGRK MSEWDQLASW IVNNDLYSEN VVWLIQLPRL YNIYKDMGIV TSFQNILDNI FIPLFEATVD PDSHPQLHVF LKQVVGFDLV
601: DDESKPERRP TKHMPTPAQW TNAFNPAFSY YVYYCYANLY VLNKLRESKG MTTITLRPHS GEAGDIDHLA ATFLTCHSIA HGINLRKSPV LQYLYYLAQI
701: GLAMSPLSNN SLFLDYHRNP FPVFFLRGLN VSLSTDDPLQ IHLTKEPLVE EYSIAASVWK LSACDLCEIA RNSVYQSGFS HALKSHWIGK DYYKRGPDGN
801: DIHKTNVPHI RVEFRDTIWK EEMQQVYLGK AVISDEVVP
101: VYVDEIPPGL PRLHTPSEGR ASVHGASSIR KTGSFVRPIS PKSPVASASA FESVEESDDD DNLTNSEGLD ASYLQANGDN EMPADANEEQ ISMAASSMIR
201: SHSVSGDLHG VQPDPIAADI LRKEPEQETF VRLNVPLEVP TSDEVEAYKC LQECLELRKR YVFQETVAPW EKEVISDPST PKPNTEPFAH YPQGKSDHCF
301: EMQDGVVHVF ANKDAKEDLF PVADATAFFT DLHHVLKVIA AGNIRTLCHR RLVLLEQKFN LHLMLNADKE FLAQKSAPHR DFYNVRKVDT HVHHSACMNQ
401: KHLLRFIKSK LRKEPDEVVI FRDGTYLTLR EVFESLDLTG YDLNVDLLDV HADKSTFHRF DKFNLKYNPC GQSRLREIFL KQDNLIQGRF LGEITKQVFS
501: DLEASKYQMA EYRISIYGRK MSEWDQLASW IVNNDLYSEN VVWLIQLPRL YNIYKDMGIV TSFQNILDNI FIPLFEATVD PDSHPQLHVF LKQVVGFDLV
601: DDESKPERRP TKHMPTPAQW TNAFNPAFSY YVYYCYANLY VLNKLRESKG MTTITLRPHS GEAGDIDHLA ATFLTCHSIA HGINLRKSPV LQYLYYLAQI
701: GLAMSPLSNN SLFLDYHRNP FPVFFLRGLN VSLSTDDPLQ IHLTKEPLVE EYSIAASVWK LSACDLCEIA RNSVYQSGFS HALKSHWIGK DYYKRGPDGN
801: DIHKTNVPHI RVEFRDTIWK EEMQQVYLGK AVISDEVVP
Arabidopsis Description
AMPDFAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VY66]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.