CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P25100_001	Banana	plastid	28.21	56.3
CDY21312	Canola	plastid	40.84	51.87
CDX90874	Canola	plastid	40.84	51.87
CDY16654	Canola	plastid	39.58	50.13
CDX94569	Canola	plastid	39.37	49.87
CDX83971	Canola	plastid	26.53	33.25
CDX96834	Canola	plastid	26.11	32.72
CDY37753	Canola	mitochondrion	10.74	19.84
CDX79484	Canola	mitochondrion	12.84	18.77
CDX84716	Canola	mitochondrion	12.84	18.77
CDY23771	Canola	mitochondrion	12.42	18.38
CDY17130	Canola	mitochondrion	12.21	17.85
CDY19433	Canola	mitochondrion	12.21	17.85
CDY33548	Canola	cytosol, mitochondrion	4.0	15.08
CDX88260	Canola	nucleus	4.42	13.64
CDX88259	Canola	nucleus	6.74	7.39
CDY72042	Canola	cytosol	5.47	6.09

Protein Annotations

Gene3D:1.10.287.80	MapMan:19.3.3.1	Gene3D:3.10.20.90	Gene3D:3.40.1380.10	GO:A0A078E7Y7	InterPro:ATP_synth_F1_ATPase_gsu
InterPro:ATP_synth_F1_gsu	InterPro:Atg8-like	EnsemblPlants:CDX97316	ProteinID:CDX97316	ProteinID:CDX97316.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986
GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	EnsemblPlantsGene:GSBRNA2T00104380001	PFAM:PF00231
PFAM:PF02991	PANTHER:PTHR11693	PANTHER:PTHR11693:SF23	SUPFAM:SSF52943	SUPFAM:SSF54236	UniParc:UPI0004EEC60E
InterPro:Ubiquitin-like_domsf	SEG:seg	:	:	:	:

Description

BnaA02g21070D

Coordinates

chrLK031898:+:881662..886951

Molecular Weight (calculated)

54100.7 Da

IEP (calculated)

10.229

GRAVY (calculated)

-0.198

Length

475 amino acids

Sequence
(BLAST)

001: MACTNLTTMW VSSKLSVSDS SSLSFRSILN PLPLPNHNSS PSRSSSVSPI QSSLRELRDR IDSVKNTQKI TEAMKLVAAA KVRRAQEAVV NGRPFSETLV
101: EVLYNINEQL QTDDIDVPLT KIRPVKKVAL VVVTGDRGLC GGFNNFIIKK AEARIKELQG LGLDYTVISV GKKGNSYFLR RPYIPVDKYL EAGIFCKSIY
201: IEVDFNNENK LYLKLLQYII TSGKLSRFFI LKLKFIIQNK NHFKLIHKNN HFDKNKNYPS YKSTPTFVFY NSTQNMSKIL GFRRKLRDLF FIIEYLYLLR
301: LVFGKFSYHV KQNIFSAYSV LGCRFDHRTL VSLDHRFASS SSLDTDRIAM AKNSFKLSNP LEVRMAESTR IREKYQDRVP VIVEKAGQSD VPDIDKKKYL
401: VPADLTVGQF VYVVRKRIKL GAEKAIFVFV KNTLPPTAAL MSAIYEEHKD EDGFLYMTYS GENTFGSASA NIALP

Best Arabidopsis Sequence Match ( AT4G21980.2 )
(BLAST)

001: MIFACLKFAE TNRIAMAKSS FKISNPLEAR MSESSRIREK YPDRIPVIVE KAGQSDVPDI DKKKYLVPAD LTVGQFVYVV RKRIKLGAEK AIFVFVKNTL
101: PPTAALMSAI YEEHKDEDGF LYMTYSGENT FGSLTVA

Arabidopsis Description

APG8AAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A8MS84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.