CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12270

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04640.1	EES12270	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36319	Sorghum	plastid	43.66	25.83
TraesCS2B01G273900.1	Wheat	plastid	37.09	22.07
TraesCS2A01G223600.1	Wheat	plastid	37.09	22.07
TraesCS2D01G229600.1	Wheat	plastid	37.09	22.01
Os07t0513000-01	Rice	plastid	36.62	21.79
KRH11433	Soybean	nucleus, plastid	33.8	19.2
KRH20854	Soybean	plastid	33.33	18.93
AT4G04640.1	Thale cress	plastid	32.86	18.77
Bra029511.1-P	Field mustard	plastid	32.86	18.67
CDY16654	Canola	plastid	32.86	18.67
Bra000802.1-P	Field mustard	plastid	32.39	18.45
CDY21312	Canola	plastid	32.39	18.45
CDX90874	Canola	plastid	32.39	18.45
CDX94569	Canola	plastid	32.39	18.4
Solyc02g080540.1.1	Tomato	plastid	32.39	18.3
PGSC0003DMT400042499	Potato	extracellular, plastid	31.92	18.04
EER95278	Sorghum	mitochondrion	23.94	15.45
GSMUA_Achr2P13970_001	Banana	mitochondrion	16.43	14.34
Bra018503.1-P	Field mustard	plastid	30.52	12.9

Protein Annotations

Gene3D:1.10.287.80	MapMan:35.1	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	UniProt:C5XU28	EnsemblPlants:EES05204
ProteinID:EES05204	ProteinID:EES05204.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0045261
GO:GO:0046933	GO:GO:0099132	PFAM:PF00231	PANTHER:PTHR11693	PANTHER:PTHR11693:SF23	EnsemblPlantsGene:SORBI_3004G169800
SUPFAM:SSF52943	unigene:Sbi.12437	UniParc:UPI0001A85762	RefSeq:XP_002452228.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:52127327..52128449

Molecular Weight (calculated)

22831.9 Da

IEP (calculated)

11.500

GRAVY (calculated)

-0.672

Length

213 amino acids

Sequence
(BLAST)

001: MSCSHLSTAW SSSSLASNAS TTQRRGSSAP RSGLVVRCSL RELRTRIDSV KNTQKITEAM KLVAAAKVRR AQEAVVSSRP FSEALPPNQE IQTEDIDLPP
101: NASDLTPPPP PLPQQQQAAP ALAPRPPQRA GPTRGASPWT PLPPWRAPAQ PATGASSVAC SSSTGDGSWR MGEEKRSRGD EQRRGVERVT GSTRELVQAW
201: LQKNGPPIRF LGA

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.