Factsheet for VIT_19s0090g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071659	Potato	plastid	70.78	60.22
Solyc12g005060.1.1	Tomato	plastid	67.86	59.89
KRH46189	Soybean	plastid	64.29	57.89
CDX83971	Canola	plastid	70.13	56.99
CDX96834	Canola	plastid	70.13	56.99
Bra016652.1-P	Field mustard	plastid	69.81	56.73
AT1G15700.1	Thale cress	plastid	69.81	55.7
VIT_17s0000g07300.t01	Wine grape	mitochondrion	22.08	21.12
Os07t0513100-01	Rice	mitochondrion, nucleus	11.36	3.55

Protein Annotations

MapMan:1.1.9.2.3	EntrezGene:100258958	wikigene:100258958	InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	InterPro:ATP_synth_F1_gsu_CS
ProteinID:CCB50662	ProteinID:CCB50662.1	UniProt:F6HEK3	EMBL:FN595751	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0016020
GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	GO:GO:0099132	EntrezGene:LOC100258958	wikigene:LOC100258958
HAMAP:MF_00815	PFAM:PF00231	PRINTS:PR00126	ScanProsite:PS00153	PANTHER:PTHR11693	PANTHER:PTHR11693:SF23
SUPFAM:SSF52943	TIGRFAMs:TIGR01146	UniParc:UPI0002109B17	ArrayExpress:VIT_19s0090g00480	EnsemblPlantsGene:VIT_19s0090g00480	EnsemblPlants:VIT_19s0090g00480.t01
RefSeq:XP_002278118	RefSeq:XP_002278118.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:+:6626033..6627120

Molecular Weight (calculated)

33866.8 Da

IEP (calculated)

4.757

GRAVY (calculated)

-0.018

Length

308 amino acids

Sequence
(BLAST)

001: MKLVAAAKVR RAQEAVINGR PFSNTLVEVL HYINEQLQDD GVSVPLTEVR AVKRVALVVI TGDRGLCGSL NAGILKMAES RIAELTDLGL DCTVISVGRK
101: GNSYFRRRSR APVVSVDRFV EGGGRFPTAK EAQVIADDVF SLFVSEEVDK VELLYTKFVS FVESATVIQT LLPLSMKGEV FDQNGNCVDA MEDELFRLTT
201: KEGKLSVERD KVQSEKVEFS PFLEFEQDPA QILDALMPLY LNSQILRALQ ESLASELAAR MCAMSNATDN AVELTKTLSL AYNRKRQAKI TGEILEIVAG
301: ADALSEQP

Best Arabidopsis Sequence Match ( AT4G04640.1 )
(BLAST)

001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV

Arabidopsis Description

ATPC1ATP synthase gamma chain 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01908]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.