Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g116600.2.1 | Tomato | cytosol | 97.28 | 97.28 |
| PGSC0003DMT400073364 | Potato | cytosol | 92.52 | 92.52 |
| VIT_09s0002g06730.t01 | Wine grape | cytosol, extracellular, plastid | 87.76 | 87.76 |
| KRH44443 | Soybean | cytosol | 85.71 | 85.71 |
| Bra026139.1-P | Field mustard | extracellular | 82.99 | 82.99 |
| Bra026769.1-P | Field mustard | extracellular | 82.99 | 82.99 |
| CDY36552 | Canola | extracellular | 82.99 | 82.99 |
| CDY55980 | Canola | extracellular | 82.99 | 82.99 |
| CDY71251 | Canola | extracellular | 82.99 | 82.99 |
| GSMUA_Achr4P05640_001 | Banana | cytosol | 81.63 | 81.63 |
| AT1G15370.1 | Thale cress | extracellular | 81.63 | 81.63 |
| GSMUA_Achr8P14590_001 | Banana | cytosol | 79.59 | 79.59 |
| TraesCS5B01G559500.1 | Wheat | cytosol | 78.91 | 78.91 |
| TraesCS5D01G565700.1 | Wheat | cytosol | 78.23 | 78.23 |
| TraesCS4A01G319600.1 | Wheat | cytosol | 78.23 | 78.23 |
| Zm00001d034893_P001 | Maize | mitochondrion | 78.23 | 78.23 |
| KRH09738 | Soybean | cytosol | 78.23 | 78.23 |
| EER90485 | Sorghum | cytosol | 78.23 | 78.23 |
| KRH47463 | Soybean | extracellular | 78.91 | 77.85 |
| CDY39638 | Canola | cytosol | 82.99 | 74.39 |
| HORVU6Hr1G069160.1 | Barley | extracellular | 40.82 | 68.97 |
| HORVU7Hr1G058240.1 | Barley | cytosol | 34.69 | 68.0 |
| HORVU3Hr1G098440.1 | Barley | cytosol | 34.69 | 68.0 |
| HORVU2Hr1G112780.2 | Barley | extracellular | 40.14 | 67.82 |
| HORVU3Hr1G030140.1 | Barley | extracellular | 38.78 | 65.52 |
| HORVU7Hr1G068500.1 | Barley | cytosol | 33.33 | 65.33 |
| HORVU3Hr1G032710.2 | Barley | extracellular | 41.5 | 62.24 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400001702 | EnsemblPlantsGene:PGSC0003DMG400000635 | EntrezGene:102596407 | Gene3D:3.30.450.60 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016192 | InterPro:Longin-like_dom_sf | PANTHER:PTHR11043 | PANTHER:PTHR11043:SF1 | PGSC:PGSC0003DMG400000635 | RefSeq:XP_006364206.1 |
| SUPFAM:SSF64356 | UniParc:UPI000296C4AB | UniProt:M0ZIY4 | MapMan:22.1.4.3 | : | : |
Description
Longin [Source:PGSC_GENE;Acc:PGSC0003DMG400000635]
Coordinates
chr3:-:56408806..56413240
Molecular Weight (calculated)
16685.5 Da
IEP (calculated)
5.812
GRAVY (calculated)
0.145
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLAVLFSNS EGNILVERFN GVPAEERLHW RSFLVKLGAE NLRGIKNEEL LVSCHKSVYI VYTVLGDVNI YVVGKDAYDE LALSEAIFVI TSAIKDVCGK
101: PPTERLFLDK YGKICLCLDE IVWTGLLENI DKDRIKRLVR LKPPTEF
101: PPTERLFLDK YGKICLCLDE IVWTGLLENI DKDRIKRLVR LKPPTEF
001: MILAVLFANS VGNVLIERFN GVPAEERLHW RSFLVKLGAD NLKGVKNEEL LVACHKSVYI VYTMLGDVSI FLVGKDEYDE LALAETIYII TAAVKDVCGK
101: PPTERVFLDK YGRICLCLDE IVWNGLLENT DKDRIKRLIR LKPPSEV
101: PPTERVFLDK YGRICLCLDE IVWNGLLENT DKDRIKRLIR LKPPSEV
Arabidopsis Description
F9L1.32 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI32]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.