Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0379g00040.t01 | Wine grape | cytosol | 0.9 | 6.98 |
| VIT_00s1373g00010.t01 | Wine grape | cytosol | 0.3 | 1.28 |
| VIT_00s0961g00020.t01 | Wine grape | cytosol, extracellular, plastid | 0.45 | 1.23 |
| VIT_00s0783g00010.t01 | Wine grape | cytosol | 0.9 | 1.06 |
| VIT_00s0379g00010.t01 | Wine grape | extracellular | 0.0 | 0.0 |
| VIT_00s1501g00010.t01 | Wine grape | extracellular | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:100263199 | wikigene:100263199 | Gene3D:2.130.10.10 | MapMan:22.1.4.4 | ProteinID:CCB52373 | ProteinID:CCB52373.1 |
| UniProt:F6HJH4 | EMBL:FN595774 | GO:GO:0000045 | GO:GO:0000421 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | EntrezGene:LOC100263199 | wikigene:LOC100263199 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19878 | PANTHER:PTHR19878:SF4 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0002108AE1 |
| ArrayExpress:VIT_00s0379g00020 | EnsemblPlantsGene:VIT_00s0379g00020 | EnsemblPlants:VIT_00s0379g00020.t01 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | RefSeq:XP_003635289 | RefSeq:XP_003635289.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrUn:-:26535295..26562361
Molecular Weight (calculated)
74782.4 Da
IEP (calculated)
8.665
GRAVY (calculated)
-0.173
Length
664 amino acids
Sequence
(BLAST)
(BLAST)
001: MELSWKCWYR VESKPFEILK EMVKGKEDCT IRSCDFDTEQ TFVLHSPEKR MEQISPDTEV HLALTPLQPV VFFGFHRRMS VTVVGTVEGG RAPTKIKTDL
101: KKPVVNLACH PRLPVLYVAY ADGWIRAYNI QTYAVHYTLQ LDNTIKLIGA GAFAFHPTLE WIFVGDRRGT LLAWDVSTER PNMIGITQVG SQPITSVAWL
201: PVLRLLVTLS KDGTLQVWKT RVMLNPNRPP MQANFFEPAA IESIDIPRIL SQQGGEAVYP LPRIRTIEVH SKLNLAVLLF ANMTGGDNLK NRAAYTREGR
301: KQLFAVLQGA RGSSASILKE KLSSLGSSGI LADHQLQAQL QEHHLKGHSQ LTISDIARKA FLYSHFMEGH AKSAPISRLP LITVLDTKHH LKDIPVCLPF
401: HLELNFFNRE NRVLHYPVRA FYVDGVNLMA YNLCSGVDTV YKKLYTSIPG NVEYHPKYII YSKKQHLFLV VYEFSGVTNE VVLYWENTDL HTANSKGSTI
501: KGRDAAFIGP NENQFAILDD DKTGLALYTL PGMASQEIDE KNEPVEQNQS ADTKVGSIRG PMQFMFETEV DRIFSTPLES TMMFASHGDQ IGLAKLVQVY
601: RLSTADGHYI STKAEGKKSI KLKANEIVLQ VTDSTFSRIL GLIVQLGNKL IEHRNHDILM HNHS
101: KKPVVNLACH PRLPVLYVAY ADGWIRAYNI QTYAVHYTLQ LDNTIKLIGA GAFAFHPTLE WIFVGDRRGT LLAWDVSTER PNMIGITQVG SQPITSVAWL
201: PVLRLLVTLS KDGTLQVWKT RVMLNPNRPP MQANFFEPAA IESIDIPRIL SQQGGEAVYP LPRIRTIEVH SKLNLAVLLF ANMTGGDNLK NRAAYTREGR
301: KQLFAVLQGA RGSSASILKE KLSSLGSSGI LADHQLQAQL QEHHLKGHSQ LTISDIARKA FLYSHFMEGH AKSAPISRLP LITVLDTKHH LKDIPVCLPF
401: HLELNFFNRE NRVLHYPVRA FYVDGVNLMA YNLCSGVDTV YKKLYTSIPG NVEYHPKYII YSKKQHLFLV VYEFSGVTNE VVLYWENTDL HTANSKGSTI
501: KGRDAAFIGP NENQFAILDD DKTGLALYTL PGMASQEIDE KNEPVEQNQS ADTKVGSIRG PMQFMFETEV DRIFSTPLES TMMFASHGDQ IGLAKLVQVY
601: RLSTADGHYI STKAEGKKSI KLKANEIVLQ VTDSTFSRIL GLIVQLGNKL IEHRNHDILM HNHS
0001: MEWATVQHLD LRHVGRGVSK PLQPHTAAFH PSQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVRMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0P2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.