CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0669300-01	Rice	plasma membrane	89.67	89.67
TraesCS2D01G544000.1	Wheat	cytosol	84.69	84.07
TraesCS2B01G572600.1	Wheat	cytosol	84.5	83.88
TraesCS2A01G542800.1	Wheat	cytosol	84.13	83.52
HORVU2Hr1G122390.1	Barley	cytosol	84.13	83.21
Zm00001d001906_P004	Maize	cytosol	90.77	77.36
GSMUA_Achr4P20130_001	Banana	cytosol	77.49	77.35
PGSC0003DMT400034517	Potato	cytosol	40.77	77.0
EER88852	Sorghum	cytosol	76.2	75.92
VIT_00s0516g00020.t01	Wine grape	cytosol	74.91	73.82
KRH51151	Soybean	cytosol	72.51	72.11
KRH11510	Soybean	cytosol	71.4	71.8
KRH02006	Soybean	cytosol	72.14	71.74
OQU84412	Sorghum	cytosol	72.32	71.66
KRH36524	Soybean	cytosol	71.03	71.43
AT4G05520.1	Thale cress	cytosol	71.03	70.51
CDY16689	Canola	cytosol	70.66	70.15
Bra029477.1-P	Field mustard	cytosol	70.66	70.15
CDX94536	Canola	cytosol	70.48	69.84
Solyc11g012020.1.1	Tomato	cytosol	69.93	69.29
GSMUA_Achr3P01050_001	Banana	cytosol, plastid	76.94	66.61
KRH45544	Soybean	cytosol	21.96	50.85
EER92924	Sorghum	cytosol	17.9	9.28
EER89004	Sorghum	cytosol	16.97	7.5

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8082576	UniProt:C5YA22
ncoils:Coil	InterPro:Dynamin_SF	EnsemblPlants:EES11620	ProteinID:EES11620	ProteinID:EES11620.1	InterPro:EF-hand-dom_pair
InterPro:EF_hand_dom	InterPro:EHD_N	InterPro:EH_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0006897	GO:GO:0006950	GO:GO:0008150
GO:GO:0009506	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0032456
GO:GO:0042538	GO:GO:0043231	GO:GO:0051260	InterPro:G_DYNAMIN_dom	InterPro:IPR000261	InterPro:IPR002048
InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF12763	PFAM:PF16880	PFscan:PS50031
PFscan:PS50222	PFscan:PS51718	PANTHER:PTHR11216	PANTHER:PTHR11216:SF85	SMART:SM00027	SMART:SM00054
EnsemblPlantsGene:SORBI_3006G259100	SUPFAM:SSF47473	SUPFAM:SSF52540	UniParc:UPI0001A87283	RefSeq:XP_002447292.1	:

Description

hypothetical protein

Coordinates

chr6:+:59490812..59495313

Molecular Weight (calculated)

60941.3 Da

IEP (calculated)

8.421

GRAVY (calculated)

-0.384

Length

542 amino acids

Sequence
(BLAST)

001: MGPDSSPKKW SLKEQRAAYL QWFALADEDG DGRLTGNDAL RFFAMSNLSK PELKQVWAIA DSKRQGYLGF FEFMTAMQLV SLAQAGNEIN QDTLSNSDLE
101: RLQLPTMEGL AKKLKKNSGS KGESAIVACH PSESPISASW FNSKSGKKIP LKSVTSIIDG LKKSYIEKLR PLEKTYQFHD FVSPLMTSSD FDAKPMVMLL
201: GQYSTGKTTF IKHLLKTSYP GAHIGPEPTT DRFVVITSGP DERCIPGNTI AVQADMPYSG LSSFGTAFLS KFECSQMPHP LLEHVTFVDT PGVLSGEKQR
301: TQRSYDFTGV TSWFAAKCDL ILLLFDPHKL DISDEFKRVI GSLRGHDDKI RIVLNKADQV DAQQLMRVYG ALLWSLGKVL NTPEVMRVYI GSFNDKPIRE
401: TAAGPLGMEL FQKEQDDLLS DLNDIPKKAC DRRINEFVKR ARAAKVHAHI ISHLKKEMPA LMGKAKAQQK LLDSLDDHFA KVQKELHLPP GDFPSVEEYR
501: ELLSAYNFDR FERLRPKMVQ GVDDMLAYDI PDLLKKFRNP YD

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.