Factsheet for TraesCS6A01G218500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 7
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G248100.1	Wheat	plastid	96.99	97.52
TraesCS6D01G201700.1	Wheat	golgi	95.07	95.07
HORVU6Hr1G055870.1	Barley	plastid	85.75	91.25
Os02t0608900-02	Rice	plastid	77.81	76.76
EES07130	Sorghum	plastid	74.25	73.44
Zm00001d017171_P001	Maize	plastid	73.7	72.12
GSMUA_Achr3P19240_001	Banana	plastid	50.14	53.67
CDX95578	Canola	plastid	46.85	51.66
Bra037673.1-P	Field mustard	plastid	47.95	51.47
CDY23410	Canola	plastid	48.22	51.31
CDX83451	Canola	plastid	46.58	51.2
KRH01858	Soybean	endoplasmic reticulum	44.66	51.1
VIT_05s0094g01390.t01	Wine grape	plastid	45.48	51.08
Bra000335.1-P	Field mustard	plastid	46.3	50.9
Solyc04g008520.2.1	Tomato	plastid	46.85	50.44
AT2G43950.1	Thale cress	plastid	47.4	50.44
CDY30448	Canola	plastid	46.85	50.29
PGSC0003DMT400075665	Potato	plastid	46.03	49.41
TraesCS5A01G120600.1	Wheat	cytosol	43.56	41.62
CDY29048	Canola	nucleus	18.36	26.07

Protein Annotations

EnsemblPlants:TraesCS6A01G218500.1	EnsemblPlantsGene:TraesCS6A01G218500	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	InterPro:OEP37-like	PANTHER:PTHR35484	PANTHER:PTHR35484:SF2	SEG:seg
SUPFAM:SSF101447	MapMan:24.4.5	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:404453920..404457494

Molecular Weight (calculated)

40576.2 Da

IEP (calculated)

8.927

GRAVY (calculated)

-0.513

Length

365 amino acids

Sequence
(BLAST)

001: MAAATATTSS SSSTPKNPNP FNLPPWLRCP LTFLYPPPPP PPPPPPPSPP PPPPPEPTVV APAQRYRRPG LRVTTEYDSE EALFAHKVSC KLAGGLAKLR
101: LSFQSDQQGH GEDPRQLFGA PVLSFVTKHF SAMYDVEGRN ALLRGNASLP GGAVQLRASH DVKEQEGEVS VITRLGDPSY RLEISSLVPY SGLPRATLHF
201: PIGQVSVEER TNEEDQKMLS VYGIAKTDFL DGILTAQYNE NDLNLRYCYK DNELTLVPSV SLPSNAVSLD FKRRFGSSDK LSYHFNFDTD EWNAVYKHTI
301: GKNYKLKAGY DSEVRVGWAS IWAGQEEGKA KTAPMKMKVQ LMLQVPQDNI RNPSLLFRVK KRWDL

Best Arabidopsis Sequence Match ( AT2G43950.1 )
(BLAST)

001: MADPSSQNPN LATPPPPSSP SPTHQIQSGT SELSPPSRPP CSTLSFLKTA NRPKLRVTSE FDSDSLLFLN KVSCKLFDNL AKLKLSFQNN SQREISQPQV
101: SFTSKHVSVL YDVEEKNTFI KSTLDVHPRL QLRALHNVKA QQGEVAMEAN LTEPGYSLEL SSPVPIGYPR ATLKFPLGEI SLQEKDEEEE EKQKRTLSVN
201: GILKRQVMNG VCTALYTDEE LRLRYAYKDD ALSFIPSISL PSNAASFAFK RRFSPSDKLS YWYNFDSNMW SAVYKRTYGK DYKLKAGYDS DVRLGWASLW
301: VGDEAGKVKT TPMKMKVQFM LQVPQDDIKS SVLMFRVKKR WDI

Arabidopsis Description

OEP37Outer envelope pore protein 37, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80565]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.