CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0094g01390.t01	Wine grape	plastid	61.44	60.31
Solyc04g008520.2.1	Tomato	plastid	63.95	60.18
CDX95578	Canola	plastid	62.38	60.12
Bra000335.1-P	Field mustard	plastid	62.38	59.94
CDX83451	Canola	plastid	62.38	59.94
PGSC0003DMT400075665	Potato	plastid	62.7	58.82
AT2G43950.1	Thale cress	plastid	63.01	58.6
CDY23410	Canola	plastid	60.81	56.56
Bra037673.1-P	Field mustard	plastid	60.19	56.47
CDY30448	Canola	plastid	59.56	55.88
GSMUA_Achr3P19240_001	Banana	plastid	58.62	54.84
HORVU6Hr1G055870.1	Barley	plastid	50.78	47.23
TraesCS5B01G121600.1	Wheat	cytosol	47.34	45.35
TraesCS6D01G201700.1	Wheat	golgi	51.41	44.93
TraesCS6A01G218500.1	Wheat	golgi	51.1	44.66
TraesCS6B01G248100.1	Wheat	plastid	50.78	44.63
EES15850	Sorghum	cytosol, plastid	46.71	44.35
EES07130	Sorghum	plastid	49.84	43.09
Zm00001d017171_P001	Maize	plastid	49.53	42.36
Os02t0608900-02	Rice	plastid	48.59	41.89
TraesCSU01G134600.1	Wheat	cytosol, plastid	47.02	39.47
TraesCS5A01G120600.1	Wheat	cytosol	47.02	39.27
Zm00001d041179_P004	Maize	cytosol, extracellular, vacuole	45.45	34.77
CDY29048	Canola	nucleus	21.0	26.07
Os12t0225200-01	Rice	cytosol	11.91	26.03

Protein Annotations

EntrezGene:100789625	MapMan:24.4.5	EMBL:ACUP02010287	EnsemblPlantsGene:GLYMA_17G000700	GO:GO:0003674	GO:GO:0005215
GO:GO:0005216	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009706
GO:GO:0009941	GO:GO:0016020	GO:GO:0031359	GO:GO:0034220	UniProt:I1MQS1	EnsemblPlants:KRH01858
ProteinID:KRH01858	ProteinID:KRH01858.1	InterPro:OEP37-like	PANTHER:PTHR35484	PANTHER:PTHR35484:SF2	UniParc:UPI000233EF18

Description

hypothetical protein

Coordinates

chr17:+:69831..78451

Molecular Weight (calculated)

36104.9 Da

IEP (calculated)

7.619

GRAVY (calculated)

-0.365

Length

319 amino acids

Sequence
(BLAST)

001: MVEMESAAEN PNYPAVDYKR PSILSFPRRP ALRVTSEFDS ESAVFFHKIS CKLLDSLAKF KFSFNHSGKG GDISEPQFSF VSKHLSLHYD LEDHNALVKT
101: SIDLAPSLQL TASHDLKAQQ GEVTVLANLA DPAYSLQLST PLPSVGLPKA TFRFPLGELS LQEKQEEEVN NLLSVDGVLK GQLFNGLCSA HYKDEELKLR
201: YGYKDDEISF LPILSLPSNA LSFAFKRRFG PSDKLSYWYN CDSNYWSAVY KRTYGKDFKF KAGYDSEIRL GWASLWVGDE GGKAKTAPMQ MKVQFMLQVP
301: QDDIKSSALM FRIKKRWDF

Best Arabidopsis Sequence Match ( AT2G43950.1 )
(BLAST)

001: MADPSSQNPN LATPPPPSSP SPTHQIQSGT SELSPPSRPP CSTLSFLKTA NRPKLRVTSE FDSDSLLFLN KVSCKLFDNL AKLKLSFQNN SQREISQPQV
101: SFTSKHVSVL YDVEEKNTFI KSTLDVHPRL QLRALHNVKA QQGEVAMEAN LTEPGYSLEL SSPVPIGYPR ATLKFPLGEI SLQEKDEEEE EKQKRTLSVN
201: GILKRQVMNG VCTALYTDEE LRLRYAYKDD ALSFIPSISL PSNAASFAFK RRFSPSDKLS YWYNFDSNMW SAVYKRTYGK DYKLKAGYDS DVRLGWASLW
301: VGDEAGKVKT TPMKMKVQFM LQVPQDDIKS SVLMFRVKKR WDI

Arabidopsis Description

OEP37Outer envelope pore protein 37, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80565]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.