Factsheet for Zm00001d017171_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07130	Sorghum	plastid	90.88	91.87
Os02t0608900-02	Rice	plastid	76.94	77.57
TraesCS6B01G248100.1	Wheat	plastid	72.39	74.38
HORVU6Hr1G055870.1	Barley	plastid	68.36	74.34
TraesCS6D01G201700.1	Wheat	golgi	72.65	74.25
TraesCS6A01G218500.1	Wheat	golgi	72.12	73.7
GSMUA_Achr3P19240_001	Banana	plastid	49.33	53.96
VIT_05s0094g01390.t01	Wine grape	plastid	44.24	50.77
CDX95578	Canola	plastid	45.04	50.76
CDX83451	Canola	plastid	45.04	50.6
CDY23410	Canola	plastid	46.11	50.15
Bra000335.1-P	Field mustard	plastid	44.5	50.0
Bra037673.1-P	Field mustard	plastid	45.58	50.0
KRH01858	Soybean	endoplasmic reticulum	42.36	49.53
PGSC0003DMT400075665	Potato	plastid	45.04	49.41
Solyc04g008520.2.1	Tomato	plastid	44.77	49.26
CDY30448	Canola	plastid	44.5	48.82
AT2G43950.1	Thale cress	plastid	44.77	48.69
Zm00001d041179_P004	Maize	cytosol, extracellular, vacuole	44.24	39.57
CDY29048	Canola	nucleus	19.3	28.02

Protein Annotations

EMBL:EU966391	EnsemblPlants:Zm00001d017171_P001	EnsemblPlants:Zm00001d017171_T001	EnsemblPlantsGene:Zm00001d017171	EntrezGene:100283912	GO:GO:0003674
GO:GO:0005215	GO:GO:0005216	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150
GO:GO:0019031	GO:GO:0034220	InterPro:OEP37-like	PANTHER:PTHR35484	PANTHER:PTHR35484:SF2	ProteinID:AQK72504.1
SEG:seg	SUPFAM:SSF101447	UniParc:UPI000182DCDB	UniProt:B6TN26	MapMan:24.4.5	:

Description

Outer envelope pore protein 37 chloroplastic

Coordinates

chr5:-:187855558..187860206

Molecular Weight (calculated)

41284.4 Da

IEP (calculated)

8.419

GRAVY (calculated)

-0.389

Length

373 amino acids

Sequence
(BLAST)

001: MASAAATTTS APAQNLNPLS INIKLPPWLS GLRCPFTFVC PPPPPPPPPP PPPPPLPPTE PVVPRSRRLP SLRVTTEYDS EEGVFVNKVS CKLAGDLAKL
101: RLSFQSDPQG QWQGGGEEGD PLQQLFAAPL VGLITKRFSV LYDVEARNAL LRGDCSLPGG AVQLRASHDV KAQQGEVSVI TSLGDPLYKM ELSSLVPYSG
201: LPRATFHFPI GQVSVEEKRN EDDEKVLSVY GIGKSDFLDG VLTAQYNEND LNLRYCYKDK ELTLVPSVSL PSNAVSIDFK RRFGPDDKLS YRYIFDTDEW
301: NAVYKHKVGK NFKVKAGYDS EVRVGWASLW VGEEGGKAKT APMKTKLQLM LQVPQDNPRN PYFLFNVKKR WDL

Best Arabidopsis Sequence Match ( AT2G43950.1 )
(BLAST)

001: MADPSSQNPN LATPPPPSSP SPTHQIQSGT SELSPPSRPP CSTLSFLKTA NRPKLRVTSE FDSDSLLFLN KVSCKLFDNL AKLKLSFQNN SQREISQPQV
101: SFTSKHVSVL YDVEEKNTFI KSTLDVHPRL QLRALHNVKA QQGEVAMEAN LTEPGYSLEL SSPVPIGYPR ATLKFPLGEI SLQEKDEEEE EKQKRTLSVN
201: GILKRQVMNG VCTALYTDEE LRLRYAYKDD ALSFIPSISL PSNAASFAFK RRFSPSDKLS YWYNFDSNMW SAVYKRTYGK DYKLKAGYDS DVRLGWASLW
301: VGDEAGKVKT TPMKMKVQFM LQVPQDDIKS SVLMFRVKKR WDI

Arabidopsis Description

OEP37Outer envelope pore protein 37, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80565]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.