Factsheet for Solyc04g008520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075665	Potato	plastid	96.46	96.18
VIT_05s0094g01390.t01	Wine grape	plastid	65.49	68.31
KRH01858	Soybean	endoplasmic reticulum	60.18	63.95
CDX95578	Canola	plastid	60.47	61.93
Bra037673.1-P	Field mustard	plastid	61.95	61.76
Bra000335.1-P	Field mustard	plastid	60.47	61.75
CDX83451	Canola	plastid	59.88	61.14
CDY23410	Canola	plastid	61.65	60.93
CDY30448	Canola	plastid	61.06	60.88
AT2G43950.1	Thale cress	plastid	60.47	59.77
GSMUA_Achr3P19240_001	Banana	plastid	57.52	57.18
HORVU6Hr1G055870.1	Barley	plastid	50.15	49.56
TraesCS5B01G121600.1	Wheat	cytosol	46.61	47.45
TraesCS6D01G201700.1	Wheat	golgi	51.03	47.4
TraesCS6B01G248100.1	Wheat	plastid	50.44	47.11
TraesCS6A01G218500.1	Wheat	golgi	50.44	46.85
EES15850	Sorghum	cytosol, plastid	45.13	45.54
Os02t0608900-02	Rice	plastid	49.56	45.41
EES07130	Sorghum	plastid	48.97	44.99
Zm00001d017171_P001	Maize	plastid	49.26	44.77
TraesCSU01G134600.1	Wheat	cytosol, plastid	47.2	42.11
TraesCS5A01G120600.1	Wheat	cytosol	46.31	41.1
Zm00001d041179_P004	Maize	cytosol, extracellular, vacuole	46.31	37.65
Os12t0225200-01	Rice	cytosol	13.57	31.51
CDY29048	Canola	nucleus	21.24	28.02

Protein Annotations

MapMan:24.4.5	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009706	GO:GO:0009941	GO:GO:0016020	GO:GO:0031359
GO:GO:0034220	UniProt:K4BP08	InterPro:OEP37-like	PANTHER:PTHR35484	PANTHER:PTHR35484:SF2	EnsemblPlantsGene:Solyc04g008520.2
EnsemblPlants:Solyc04g008520.2.1	UniParc:UPI000276714C	SEG:seg	:	:	:

Description

Outer envelope pore protein 37, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G43950) UniProtKB/Swiss-Prot;Acc:O80565]

Coordinates

chr4:-:2142947..2150143

Molecular Weight (calculated)

37995.3 Da

IEP (calculated)

8.690

GRAVY (calculated)

-0.398

Length

339 amino acids

Sequence
(BLAST)

001: MAESKLELKS PPNPNSLIVS AQPSSPPESP PVTSGGGFVP AAWFRQRPKL RVTTEFDSDS SVFFHRISCK VLDSLAKLKF SFQNNGKGEI SDPQLALTSK
101: YLSLHYDIEE KNALVNASFD VAPGLQFKAV HEVKSQQGEL AMVADLAGPA YKFELSSAVP AIGKPRATIR FPLGEVSLEE KEEEEEEQAK RILSVNGILK
201: GQILNGVCTA KYKDEALDLR YCFKDEQMTF IPSISLPSNA MSFAFKRRFG PSDKLSYWYN LDTNYWSTVY KHNIGKDYKF KAGYDSEVRL GWASLWVGEE
301: SGKAKTAPMK MKVQFMLQVP QDDITSSTLM FRAKKRWDI

Best Arabidopsis Sequence Match ( AT2G43950.1 )
(BLAST)

001: MADPSSQNPN LATPPPPSSP SPTHQIQSGT SELSPPSRPP CSTLSFLKTA NRPKLRVTSE FDSDSLLFLN KVSCKLFDNL AKLKLSFQNN SQREISQPQV
101: SFTSKHVSVL YDVEEKNTFI KSTLDVHPRL QLRALHNVKA QQGEVAMEAN LTEPGYSLEL SSPVPIGYPR ATLKFPLGEI SLQEKDEEEE EKQKRTLSVN
201: GILKRQVMNG VCTALYTDEE LRLRYAYKDD ALSFIPSISL PSNAASFAFK RRFSPSDKLS YWYNFDSNMW SAVYKRTYGK DYKLKAGYDS DVRLGWASLW
301: VGDEAGKVKT TPMKMKVQFM LQVPQDDIKS SVLMFRVKKR WDI

Arabidopsis Description

OEP37Outer envelope pore protein 37, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80565]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.