Factsheet for TraesCS6D01G201700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 6
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G218500.1	Wheat	golgi	95.07	95.07
TraesCS6B01G248100.1	Wheat	plastid	93.15	93.66
HORVU6Hr1G055870.1	Barley	plastid	87.12	92.71
Os02t0608900-02	Rice	plastid	78.08	77.03
EES07130	Sorghum	plastid	73.97	73.17
Zm00001d017171_P001	Maize	plastid	74.25	72.65
GSMUA_Achr3P19240_001	Banana	plastid	50.68	54.25
CDX95578	Canola	plastid	47.12	51.96
Bra037673.1-P	Field mustard	plastid	48.22	51.76
VIT_05s0094g01390.t01	Wine grape	plastid	46.03	51.69
CDY23410	Canola	plastid	48.49	51.6
KRH01858	Soybean	endoplasmic reticulum	44.93	51.41
CDX83451	Canola	plastid	46.58	51.2
Solyc04g008520.2.1	Tomato	plastid	47.4	51.03
Bra000335.1-P	Field mustard	plastid	46.3	50.9
CDY30448	Canola	plastid	47.12	50.59
AT2G43950.1	Thale cress	plastid	47.4	50.44
PGSC0003DMT400075665	Potato	plastid	46.85	50.29
CDY29048	Canola	nucleus	18.08	25.68

Protein Annotations

MapMan:24.4.5	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009706	GO:GO:0009941	GO:GO:0016020	GO:GO:0031359
InterPro:OEP37-like	PANTHER:PTHR35484	PANTHER:PTHR35484:SF2	SUPFAM:SSF101447	EnsemblPlantsGene:TraesCS6D01G201700	EnsemblPlants:TraesCS6D01G201700.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:283813792..283817195

Molecular Weight (calculated)

40589.2 Da

IEP (calculated)

8.995

GRAVY (calculated)

-0.539

Length

365 amino acids

Sequence
(BLAST)

001: MAAATATTSS SSSTPKNPNP FNLPPWLRCP LTFLCPPPPP PPPPPPPPPP PPPPPEPTVV APGQRYRRPG LRVTTEYDSE EALFAHKVSC KLAGGLAKLR
101: LSFQSDQQGH GEDPRQLFGA PVLSFVTKHF SAMYDVEGRN ALLRGNASLP GGAVQLRASH DVKEQEGEVS VRTRLGDPSY RLEISSLVPY SGLPRATLHF
201: PIGQVSVEER TNEEDQKMLS VYGIAKTDFL DGILTAQYNE NDLNLRYCYK DNELTLVPSV SLPSNAVSLD FKRRFGSSDK LSYHFNFDTD EWNAVYKHTI
301: GKNYKLKAGY DSEVRVGWAS IWAGQEEGKA KTAPMKMKVQ FMLQVPQDNI RNPSLLFRVK KRWDL

Best Arabidopsis Sequence Match ( AT2G43950.1 )
(BLAST)

001: MADPSSQNPN LATPPPPSSP SPTHQIQSGT SELSPPSRPP CSTLSFLKTA NRPKLRVTSE FDSDSLLFLN KVSCKLFDNL AKLKLSFQNN SQREISQPQV
101: SFTSKHVSVL YDVEEKNTFI KSTLDVHPRL QLRALHNVKA QQGEVAMEAN LTEPGYSLEL SSPVPIGYPR ATLKFPLGEI SLQEKDEEEE EKQKRTLSVN
201: GILKRQVMNG VCTALYTDEE LRLRYAYKDD ALSFIPSISL PSNAASFAFK RRFSPSDKLS YWYNFDSNMW SAVYKRTYGK DYKLKAGYDS DVRLGWASLW
301: VGDEAGKVKT TPMKMKVQFM LQVPQDDIKS SVLMFRVKKR WDI

Arabidopsis Description

OEP37Outer envelope pore protein 37, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80565]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.