Factsheet for Solyc05g005780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
plasma membrane 1
cytosol 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010532	Potato	cytosol, mitochondrion	98.29	98.29
Solyc04g025870.2.1	Tomato	plastid	83.62	83.81
CDX91727	Canola	mitochondrion	11.04	80.83
VIT_01s0026g00310.t01	Wine grape	mitochondrion	80.09	80.18
KRH74623	Soybean	mitochondrion	79.29	80.02
KRH69527	Soybean	mitochondrion	79.18	79.73
GSMUA_Achr10P...	Banana	mitochondrion	29.24	76.26
KRH45711	Soybean	cytosol, mitochondrion	75.88	75.71
Bra012393.1-P	Field mustard	mitochondrion	72.92	73.34
CDY59088	Canola	mitochondrion	72.7	73.28
CDY25807	Canola	mitochondrion	72.92	73.26
Os02t0805000-01	Rice	cytosol, plasma membrane	40.73	73.21
CDY28466	Canola	mitochondrion	72.7	73.11
Bra024627.1-P	Field mustard	mitochondrion	72.47	73.05
AT1G23900.2	Thale cress	mitochondrion	72.7	72.95
CDY47649	Canola	mitochondrion	72.35	72.94
AT1G60070.2	Thale cress	cytosol, mitochondrion	73.38	71.83
HORVU5Hr1G019420.1	Barley	cytosol	6.83	70.59
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	69.06	70.34
CDY24514	Canola	cytosol	16.04	69.8
GSMUA_Achr9P18340_001	Banana	mitochondrion	68.26	69.52
HORVU3Hr1G053020.1	Barley	cytosol	6.71	69.41
HORVU1Hr1G048590.1	Barley	cytosol, mitochondrion	6.71	69.41
HORVU7Hr1G027050.3	Barley	cytosol	68.26	69.04
TraesCS7A01G129800.3	Wheat	peroxisome	67.92	68.62
TraesCS7D01G128900.2	Wheat	cytosol	67.92	68.62
TraesCS7B01G029800.2	Wheat	cytosol	67.69	68.39
Os06t0167100-01	Rice	plasma membrane	67.58	68.28
KXG19397	Sorghum	cytosol, plastid	66.89	67.28
Zm00001d045195_P002	Maize	cytosol	66.1	67.01
Zm00001d036305_P003	Maize	mitochondrion	66.89	64.9
TraesCS6A01G373200.1	Wheat	mitochondrion	65.76	64.8
CDY33619	Canola	mitochondrion	33.33	64.4
TraesCS6D01G357400.1	Wheat	golgi	65.19	63.88
TraesCS6B01G410900.2	Wheat	cytosol	64.73	63.5
KXG31353	Sorghum	cytosol	64.62	63.04
Zm00001d051998_P003	Maize	cytosol	64.51	62.93
HORVU3Hr1G040310.1	Barley	cytosol	12.17	59.78
HORVU6Hr1G087920.7	Barley	mitochondrion	65.76	57.63
HORVU7Hr1G050510.16	Barley	cytosol	10.58	56.71
GSMUA_Achr10P...	Banana	cytosol	23.21	55.59
Bra031528.1-P	Field mustard	mitochondrion	13.31	53.67
KRG99303	Soybean	nucleus	8.3	40.56
Solyc11g066760.1.1	Tomato	cytosol	16.61	31.26
Solyc06g074650.2.1	Tomato	plastid	25.94	22.42
Solyc08g075310.2.1	Tomato	cytosol	21.62	19.63
Solyc03g119270.1.1	Tomato	nucleus	17.29	15.67
Solyc11g066770.1.1	Tomato	cytosol	6.03	12.21

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:22.1.2.1	InterPro:AP1_complex_gsu	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:GAE_dom	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030121	GO:GO:0030131	GO:GO:0031410	InterPro:IPR008153
InterPro:IPR011989	UniProt:K4BWA5	PFAM:PF01602	PFAM:PF02883	PIRSF:PIRSF037094	PFscan:PS50180
PANTHER:PTHR22780	PANTHER:PTHR22780:SF27	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348	EnsemblPlantsGene:Solyc05g005780.2
EnsemblPlants:Solyc05g005780.2.1	UniParc:UPI0002766FF6	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:593461..608931

Molecular Weight (calculated)

96188.9 Da

IEP (calculated)

6.657

GRAVY (calculated)

-0.077

Length

879 amino acids

Sequence
(BLAST)

001: MNPFSSGTRL RDMIRAIRAS KTAAEERAVV RKECAAIRAA ISDNDHDYRH RNLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSI KQDLNHTNQY IVGLALCALG NIGSAEMARD LAPEVERLLK FRDPNIRKKA ALCSIRIIKK VPDLAENFIH AAASLLSEKH HGVLITGVQL
201: CIDLCKISTE ALEHFRKKCT DGLVKLMRDL ANSPYAPEYD ISGITDPFLQ IRLLRLLRSL GKDDADASDT MNDILAQVAT KTESNKNAGN AILYECVAAI
301: MSVEDNGGLR VLAINILGRF LSNRDNNIRY VALNMLMKAL AVDSQAVQRH RTTILECVKD SDPSIRKRAV ELVYLLVNES NVKPMTKELI EYLEASDPEF
401: RGDLTAKICS IVEKFSPEKI WYIDQMLKVL SEAGNDVKDE AWHSLIVVIT NASNLHGYAV RSLYRSVQAA GEQETLVRVA IWCIGEYGDM LVNNAGRLDI
501: EEPLTVTESD AVDVLETSFK SHSFDLTTRA MCLIALLKLS SRFPTCSQRI NDIIVQYKGS FVLELQQRAI EFNSIIARHQ NIRPSLVERM PVLDEATHSG
601: RKAGSVPAAV STSQGVSVNL PNGVAKPSAA PLVDLLDLSS DDVPAPSSSG GDFLQDLLGV DLVPVSSQSG TNQAQVSGTN VLLDLLSIGT PSANSSPSTI
701: QASPSNVDTK SPMDLLDRLS SPSAPSVQVS TTAGSSPMLD LLNGFPSSSP IAVTEGNGLA YPSIVAFESS SLKLTFNFSK QPENPQTTLI EASFTNKSGE
801: VLTNFIFQAA VPKFLQLHLD PASGNMLPAN SSGSIMQKLK LTNSQHGKKS LVMRIRIAYK VNNKDVLEEG QVNNFPREL

Best Arabidopsis Sequence Match ( AT1G60070.1 )
(BLAST)

001: MNPFSSGTRL SDMIRAIRAS KTAAEERAVV RKECAAIRAS INENDQDYRH RDLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHTNQY IVGLALCALG NICSAEMARD LAPEVERLLQ FRDPNIRKKA ALCAIRIIRK VPDLSENFIN PGAALLKEKH HGVLITGVHL
201: CTEICKVSSE ALEYFRKKCT EGLVKTLRDI ANSPYSPEYD VAGITDPFLH IRLLKLLRVL GQGDADASDC MNDILAQVAS KTESNKNAGN AILYECVQTI
301: MSIEENGGLR VLAINILGKF LSNRDNNIRY VALNMLMRSL TVDSQAVQRH RATILECVKD SDASIQKRAL ELIYLLVNEN NVKPLAKELI EYLEVSEQDF
401: KGDLTAKICS IVEKFAPEKI WYIDQMLKVL SEAGTYVKED VWHALIVVIT NAPDLHGYTV RALYRALHTS FEQETLVRVA IWCIGEYADL LVNNAGMLDL
501: EDPITVTESD AVDVVENAIK HHLSDVTTKA MALIALLKIS SRFPSCSERV KSIIGQNKGS FVLELQQRSL EFSSVIQKHQ NIRSSLVERM PVLDEATFSG
601: RRAGSLPASV STSGKSPLGI PNGVAKAAAP LVDLLDLGSD DTPAPTSSSN NFLQDLLGVD LSQPSAQPGA MQPSQAGADI LMDLLSIGTP APVQNGSANG
701: DLLSIQDNNA PIAPSLTSPT APSSMMDLLD GFGPTPPKSE DKSAAYPSIV AFESSSLKIE FNFTKQSENP QTTDIVANFI NLTPNVYTEF LFQAAVPKFL
801: QLHLDPASSN SLPANGNIKQ TMRVTNSQKG KKPIVMRMRV GYKINGKDVL EEGQINNFPR GL

Arabidopsis Description

Adaptor protein complex AP-1, gamma subunit [Source:UniProtKB/TrEMBL;Acc:F4IEP9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.