Factsheet for HORVU6Hr1G087920.7

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G373200.1	Wheat	mitochondrion	87.84	98.77
TraesCS6D01G357400.1	Wheat	golgi	87.24	97.55
HORVU5Hr1G019420.1	Barley	cytosol	8.18	96.47
TraesCS6B01G410900.2	Wheat	cytosol	85.84	96.09
HORVU3Hr1G053020.1	Barley	cytosol	7.98	94.12
Os02t0805000-01	Rice	cytosol, plasma membrane	45.06	92.43
HORVU1Hr1G048590.1	Barley	cytosol, mitochondrion	7.78	91.76
KXG31353	Sorghum	cytosol	75.97	84.57
Zm00001d051998_P003	Maize	cytosol	75.27	83.8
GSMUA_Achr10P...	Banana	mitochondrion	27.92	83.09
HORVU7Hr1G027050.3	Barley	cytosol	70.99	81.93
HORVU3Hr1G040310.1	Barley	cytosol	14.46	81.01
CDX91727	Canola	mitochondrion	8.97	75.0
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	64.01	74.39
GSMUA_Achr9P18340_001	Banana	mitochondrion	63.91	74.28
HORVU7Hr1G050510.16	Barley	cytosol	11.86	72.56
VIT_01s0026g00310.t01	Wine grape	mitochondrion	61.32	70.05
KRH69527	Soybean	mitochondrion	60.12	69.07
KRH74623	Soybean	mitochondrion	59.82	68.89
CDY59088	Canola	mitochondrion	59.02	67.89
Bra024627.1-P	Field mustard	mitochondrion	58.92	67.78
AT1G23900.2	Thale cress	mitochondrion	59.02	67.58
CDY47649	Canola	mitochondrion	58.72	67.55
CDY25807	Canola	mitochondrion	58.82	67.43
CDY28466	Canola	mitochondrion	58.62	67.28
Bra012393.1-P	Field mustard	mitochondrion	58.52	67.16
Solyc04g025870.2.1	Tomato	plastid	58.72	67.16
KRH45711	Soybean	cytosol, mitochondrion	58.52	66.63
PGSC0003DMT400010532	Potato	cytosol, mitochondrion	58.13	66.33
Solyc05g005780.2.1	Tomato	nucleus	57.63	65.76
CDY24514	Canola	cytosol	13.16	65.35
AT1G60070.2	Thale cress	cytosol, mitochondrion	58.42	65.26
CDY33619	Canola	mitochondrion	27.52	60.66
GSMUA_Achr10P...	Banana	cytosol	19.84	54.22
Bra031528.1-P	Field mustard	mitochondrion	11.47	52.75
KRG99303	Soybean	nucleus	6.58	36.67
HORVU4Hr1G089310.1	Barley	cytosol	21.14	19.96
HORVU3Hr1G093320.4	Barley	cytosol, mitochondrion, nucleus	16.55	17.24
HORVU1Hr1G054180.2	Barley	cytosol, plastid	14.06	14.87

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:22.1.2.1	UniProt:A0A287V2T7	InterPro:AP1_complex_gsu	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	ncoils:Coil	InterPro:GAE_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030121	GO:GO:0030131	GO:GO:0031410	EnsemblPlantsGene:HORVU6Hr1G087920
EnsemblPlants:HORVU6Hr1G087920.7	InterPro:IPR008153	InterPro:IPR011989	PFAM:PF01602	PFAM:PF02883	PIRSF:PIRSF037094
PFscan:PS50180	PANTHER:PTHR22780	PANTHER:PTHR22780:SF27	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348
UniParc:UPI000B480F19	SEG:seg	:	:	:	:

Description

AP-1 complex subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A287V2T7]

Coordinates

chrchr6H:-:565352826..565363431

Molecular Weight (calculated)

109055.0 Da

IEP (calculated)

8.159

GRAVY (calculated)

-0.070

Length

1003 amino acids

Sequence
(BLAST)

0001: MFELPWFQTG LKFLKYRKIQ GAAGSSSHHR APTVATISTP PDPPIVLLPA ASLLPSFPPP TTSAARSREL PPPPPRPSRA RARARAPRDP KLDTVEKIVE
0101: DFASDMALNP FSSGTRLRDM IRAIRACKTA AEERAVVRRE CAAIRAAISG DGQDLRHRNM AKLMFIHMLG YPTHFGQMEC LKLIAAVGYP EKRIGYLGLM
0201: LLLDERQEVL MLVTNSLKQD LNHSNQFIVG LALCALGNIC SAEMARDLAP EVERLMRSRD ANTKKKAALC SVRIVRKVPD LAENFMGLAA SLLKEKHHGV
0301: LISAVQLCTE LCKASKDALE YLRKNCIEGL VRILRDVSNS SYAPEYDVAG ISDPFLHIRV LKLMRMLGQG DADCSDYMND ILAQVATKTE SNKNAGNAIL
0401: YECVETIMGI EATSGLRVLA INILGRFLSN RDNNIRYVAL NILMRAITVD TQAVQRHRVT ILECVKDADA SIRKRALELV YLLVNDTNVK PLTKELVDYL
0501: QVADPDFKED LTAKICSIAE KFSQEKLWYL DQMFKVLSLA GNHVKDDVWH ALIVVISNAS ELQGYSVRSL YTALQAYSEQ QGSLLRVAVW CIGEYGEMLV
0601: NNVGMLEAEG PITVTESDAV DAVELGLNRY AADVTTRSMC LVALLKLSSR FPSMSERIKQ IVAQNKENMV LELQQRSIEF GSIIQRHQSI RSSLLERMPV
0701: LDEATYLVKR ASATQATIPA YKPAAVTPGG LKLPNGVAKP AAAPLVDLLD LSSDDAPVTT TASATAAPSD FLQDLLGIGG TNLSTAGAPS SASTDILMDL
0801: LSMGSSPSQN GLPAPGLSFP AQEKKPVSAT PQVGSLVPEP MDLLGSLSSS ASISGTKSTI AAPQAVDLLD SLSPSTSVSG LEDTRPSITA FQSATLKITF
0901: DIRKQPGKPQ ETTIHATFTN LTSSNYTDFI FQAAVPKFIQ LRLDPASGNI VPANGKGSVT QGFSVTNNQH GQKPLAMRIR MSYKVNGEDR LEQGQVSNFP
1001: PGV

Best Arabidopsis Sequence Match ( AT1G23900.1 )
(BLAST)

001: MNPFSSGTRL RDMIRAIRAC KTAAEERAVV RKECADIRAL INEDDPHDRH RNLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHSNQY VVGLALCALG NICSAEMARD LAPEVERLIQ FRDPNIRKKA ALCSTRIIRK VPDLAENFVN AAASLLKEKH HGVLITGVQL
201: CYELCTINDE ALEYFRTKCT EGLIKTLRDI TNSAYQPEYD VAGITDPFLH IRLLRLLRVL GQGDADASDL MTDILAQVAT KTESNKNAGN AVLYECVETI
301: MAIEDTNSLR VLAINILGRF LSNRDNNIRY VALNMLMKAI TFDDQAVQRH RVTILECVKD PDASIRKRAL ELVTLLVNEN NVTQLTKELI DYLEISDEDF
401: KEDLSAKICF IVEKFSPEKL WYIDQMLKVL CEAGKFVKDD VWHALIVVIS NASELHGYTV RALYKSVLTY SEQETLVRVA VWCIGEYGDL LVNNVGMLGI
501: EDPITVTESD AVDVIEDAIT RHNSDSTTKA MALVALLKLS SRFPSISERI KDIIVKQKGS LLLEMQQRAI EYNSIVDRHK NIRSSLVDRM PVLDEATFNV
601: RRAGSFPASV STMAKPSVSL QNGVEKLPVA PLVDLLDLDS DDIMAAPSPS GTDFLQDLLG VDLGSSSAQY GATQAPKAGT DLLLDILSIG TPSPAQNSTS
701: SIGLLSIADV NNNPSIALDT LSSPAPPHVA TTSSTGMFDL LDGLSPSPSK EATNGPAYAP IVAYESSSLK IEFTFSKTPG NLQTTNVQAT FTNLSPNTFT
801: DFIFQAAVPK FLQLHLDPAS SNTLLASGSG AITQNLRVTN SQQGKKSLVM RMRIGYKLNG KDVLEEGQVS NFPRGL

Arabidopsis Description

GAMMA-ADRAP-1 complex subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q84K16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.