Factsheet for VIT_01s0026g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69527	Soybean	mitochondrion	82.23	82.7
KRH74623	Soybean	mitochondrion	82.0	82.66
CDX91727	Canola	mitochondrion	11.28	82.5
GSMUA_Achr10P...	Banana	mitochondrion	31.09	81.01
PGSC0003DMT400010532	Potato	cytosol, mitochondrion	80.75	80.66
Solyc05g005780.2.1	Tomato	nucleus	80.18	80.09
Solyc04g025870.2.1	Tomato	plastid	79.61	79.7
KRH45711	Soybean	cytosol, mitochondrion	79.61	79.34
Os02t0805000-01	Rice	cytosol, plasma membrane	43.74	78.53
HORVU5Hr1G019420.1	Barley	cytosol	7.52	77.65
CDY59088	Canola	mitochondrion	77.11	77.64
CDY47649	Canola	mitochondrion	76.88	77.41
Bra024627.1-P	Field mustard	mitochondrion	76.77	77.29
AT1G23900.2	Thale cress	mitochondrion	76.99	77.17
CDY28466	Canola	mitochondrion	76.54	76.89
CDY25807	Canola	mitochondrion	76.54	76.8
Bra012393.1-P	Field mustard	mitochondrion	76.42	76.77
HORVU1Hr1G048590.1	Barley	cytosol, mitochondrion	7.4	76.47
HORVU3Hr1G053020.1	Barley	cytosol	7.4	76.47
AT1G60070.2	Thale cress	cytosol, mitochondrion	77.68	75.95
GSMUA_Achr9P18340_001	Banana	mitochondrion	72.44	73.7
CDY24514	Canola	cytosol	16.86	73.27
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	71.87	73.12
HORVU7Hr1G027050.3	Barley	cytosol	72.32	73.07
TraesCS7D01G128900.2	Wheat	cytosol	71.98	72.64
TraesCS7A01G129800.3	Wheat	peroxisome	71.75	72.41
Os06t0167100-01	Rice	plasma membrane	71.75	72.41
TraesCS7B01G029800.2	Wheat	cytosol	71.53	72.18
Zm00001d045195_P002	Maize	cytosol	70.73	71.63
KXG19397	Sorghum	cytosol, plastid	71.18	71.51
Zm00001d036305_P003	Maize	mitochondrion	71.07	68.87
TraesCS6A01G373200.1	Wheat	mitochondrion	69.7	68.61
TraesCS6D01G357400.1	Wheat	golgi	69.59	68.12
TraesCS6B01G410900.2	Wheat	cytosol	69.02	67.63
CDY33619	Canola	mitochondrion	34.4	66.37
Zm00001d051998_P003	Maize	cytosol	67.77	66.04
KXG31353	Sorghum	cytosol	67.77	66.04
HORVU3Hr1G040310.1	Barley	cytosol	13.1	64.25
HORVU7Hr1G050510.16	Barley	cytosol	11.62	62.2
HORVU6Hr1G087920.7	Barley	mitochondrion	70.05	61.32
Bra031528.1-P	Field mustard	mitochondrion	14.46	58.26
GSMUA_Achr10P...	Banana	cytosol	23.12	55.31
KRG99303	Soybean	nucleus	8.09	39.44
VIT_06s0061g01170.t01	Wine grape	cytosol	24.6	21.28
VIT_02s0087g00690.t01	Wine grape	nucleus	20.61	18.82
VIT_17s0000g03430.t01	Wine grape	cytosol	16.63	15.22

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100241508	wikigene:100241508	Gene3D:2.60.40.1230	MapMan:22.1.2.1	InterPro:AP1_complex_gsu
InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:CBI32122	ProteinID:CBI32122.3	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig
InterPro:Clathrin_app_Ig-like_sf	UniProt:D7TNP9	EMBL:FN596002	InterPro:GAE_dom	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030121	GO:GO:0030131	GO:GO:0031410	InterPro:IPR008153
InterPro:IPR011989	EntrezGene:LOC100241508	wikigene:LOC100241508	PFAM:PF01602	PFAM:PF02883	PIRSF:PIRSF037094
PFscan:PS50180	PANTHER:PTHR22780	PANTHER:PTHR22780:SF27	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348
TIGR:TC63280	TIGR:TC71182	UniParc:UPI0001982A08	ArrayExpress:VIT_01s0026g00310	EnsemblPlantsGene:VIT_01s0026g00310	EnsemblPlants:VIT_01s0026g00310.t01
unigene:Vvi.2269	RefSeq:XP_002265190	RefSeq:XP_002265190.1	SEG:seg	:	:

Description

AP-1 complex subunit gamma [Source:UniProtKB/TrEMBL;Acc:D7TNP9]

Coordinates

chr1:-:8992848..9017917

Molecular Weight (calculated)

96490.1 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.003

Length

878 amino acids

Sequence
(BLAST)

001: MNPFSSGTRL RDMIRAIRAC KTAAEERAVV RKECAAIRAS VSENDHDYRH RNLAKLMFIH MLGYPTHFGQ MECLKLIAAA GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHNNQY IVGLALCALG NICSAEMARD LAPEVERLMQ FRDPNIRKKA ALCSIRIIRK VPDLAENFMH PATNLLKEKH HGVLITGVQL
201: CTEICKVSVE ALEHFRKKCT EVLVKVLKDV VNSPYAPEYD IAGITDPFLH IRLLRLLRVL GQGDADASDC MNDILAQVAT KTESNKNAGN AILYECVETI
301: MSIEDTSGLR VLAINILGRF LSNRDNNIRY VALNMLMKAI TVDAQAVQRH RATILECVKD SDASIRKRAL ELIYVLVNDS NVKPLAKELI DYLEVSDPEF
401: KGDLTAKICS IVEKFSPEKI WYIDQMLKVL SEAGNFVKDE VWHALIVVIS NASDLHGYTV RSLYRAFQAS VEQECLVRVA VWCIGEYGEM LVNNVGMLDI
501: EEPITVTESD AVDVIEIAIK RHTSDLTTRA MALIALLKLS CRFPSCSERI RDIIVQCKGS LVLELQQRSI EFNSIIGKHQ NIRSVLVERM PVLDEATYNG
601: RRAGSMPATV SMSSGASLNL PNGVAKPPAA PLVDLLDLSS DDTPAPSSSG GDFLHDLLGV DLSVGSSLSG MTQVPKAGTD VLLDLLSIGT PPPAQSSLST
701: PDILSSSQDN KMPAPTLERL SSPSSISIQA SSPAGAAPMM DLLDGFAPNL PLPEDNGPVY PSIVAFESSA LRLTFNFSKT PANPQTTLVQ ASFTNLSPNI
801: FTDFIFQAAV PKFLQLHLDS ASGNTLPASG NGSITQNLRV TNSLHGKKPL VMRIRIAYKM NNKDVLEEGQ INNFPRDL

Best Arabidopsis Sequence Match ( AT1G60070.1 )
(BLAST)

001: MNPFSSGTRL SDMIRAIRAS KTAAEERAVV RKECAAIRAS INENDQDYRH RDLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHTNQY IVGLALCALG NICSAEMARD LAPEVERLLQ FRDPNIRKKA ALCAIRIIRK VPDLSENFIN PGAALLKEKH HGVLITGVHL
201: CTEICKVSSE ALEYFRKKCT EGLVKTLRDI ANSPYSPEYD VAGITDPFLH IRLLKLLRVL GQGDADASDC MNDILAQVAS KTESNKNAGN AILYECVQTI
301: MSIEENGGLR VLAINILGKF LSNRDNNIRY VALNMLMRSL TVDSQAVQRH RATILECVKD SDASIQKRAL ELIYLLVNEN NVKPLAKELI EYLEVSEQDF
401: KGDLTAKICS IVEKFAPEKI WYIDQMLKVL SEAGTYVKED VWHALIVVIT NAPDLHGYTV RALYRALHTS FEQETLVRVA IWCIGEYADL LVNNAGMLDL
501: EDPITVTESD AVDVVENAIK HHLSDVTTKA MALIALLKIS SRFPSCSERV KSIIGQNKGS FVLELQQRSL EFSSVIQKHQ NIRSSLVERM PVLDEATFSG
601: RRAGSLPASV STSGKSPLGI PNGVAKAAAP LVDLLDLGSD DTPAPTSSSN NFLQDLLGVD LSQPSAQPGA MQPSQAGADI LMDLLSIGTP APVQNGSANG
701: DLLSIQDNNA PIAPSLTSPT APSSMMDLLD GFGPTPPKSE DKSAAYPSIV AFESSSLKIE FNFTKQSENP QTTDIVANFI NLTPNVYTEF LFQAAVPKFL
801: QLHLDPASSN SLPANGNIKQ TMRVTNSQKG KKPIVMRMRV GYKINGKDVL EEGQINNFPR GL

Arabidopsis Description

Adaptor protein complex AP-1, gamma subunit [Source:UniProtKB/TrEMBL;Acc:F4IEP9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.